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本文引用的文献

1
SiMix: A domain generalization method for cross-site brain MRI harmonization via site mixing.SiMix:一种通过站点混合实现跨站点脑 MRI 配准的领域泛化方法。
Neuroimage. 2024 Oct 1;299:120812. doi: 10.1016/j.neuroimage.2024.120812. Epub 2024 Aug 27.
2
Structural MRI Harmonization via Disentangled Latent Energy-Based Style Translation.基于解缠潜在能量的风格转换实现结构磁共振成像的协调
Mach Learn Med Imaging. 2023 Oct;14348:1-11. doi: 10.1007/978-3-031-45673-2_1. Epub 2023 Oct 15.
3
Generating Realistic Brain MRIs via a Conditional Diffusion Probabilistic Model.通过条件扩散概率模型生成逼真的脑部磁共振成像。
Med Image Comput Comput Assist Interv. 2023 Oct;14227:14-24. doi: 10.1007/978-3-031-43993-3_2. Epub 2023 Oct 1.
4
HACA3: A unified approach for multi-site MR image harmonization.HACA3:一种多站点磁共振图像匀场的统一方法。
Comput Med Imaging Graph. 2023 Oct;109:102285. doi: 10.1016/j.compmedimag.2023.102285. Epub 2023 Aug 14.
5
ImUnity: A generalizable VAE-GAN solution for multicenter MR image harmonization.ImUnity:一种用于多中心磁共振图像匀场的可推广的 VAE-GAN 解决方案。
Med Image Anal. 2023 Aug;88:102799. doi: 10.1016/j.media.2023.102799. Epub 2023 Mar 24.
6
DomainATM: Domain adaptation toolbox for medical data analysis.DomainATM:医学数据分析的领域自适应工具箱。
Neuroimage. 2023 Mar;268:119863. doi: 10.1016/j.neuroimage.2023.119863. Epub 2023 Jan 5.
7
OpenBHB: a Large-Scale Multi-Site Brain MRI Data-set for Age Prediction and Debiasing.OpenBHB:一个用于年龄预测和去偏的大规模多站点脑 MRI 数据集。
Neuroimage. 2022 Nov;263:119637. doi: 10.1016/j.neuroimage.2022.119637. Epub 2022 Sep 17.
8
Goal-specific brain MRI harmonization.基于目标的脑 MRI 配准
Neuroimage. 2022 Nov;263:119570. doi: 10.1016/j.neuroimage.2022.119570. Epub 2022 Aug 17.
9
Self-supervised learning for multi-center magnetic resonance imaging harmonization without traveling phantoms.无旅行体模的多中心磁共振成像匀场的自监督学习。
Phys Med Biol. 2022 Jul 8;67(14). doi: 10.1088/1361-6560/ac7b66.
10
Style Transfer Using Generative Adversarial Networks for Multi-Site MRI Harmonization.使用生成对抗网络进行多站点磁共振成像协调的风格迁移
Med Image Comput Comput Assist Interv. 2021 Sep-Oct;12903:313-322. doi: 10.1007/978-3-030-87199-4_30. Epub 2021 Sep 21.

基于解缠潜在能量的风格转换:一种图像级结构磁共振成像协调框架。

Disentangled latent energy-based style translation: An image-level structural MRI harmonization framework.

作者信息

Wu Mengqi, Zhang Lintao, Yap Pew-Thian, Zhu Hongtu, Liu Mingxia

机构信息

Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA; Joint Department of Biomedical Engineering, University of North Carolina at Chapel Hill and North Carolina State University, Chapel Hill, NC 27599, USA.

Department of Radiology and Biomedical Research Imaging Center, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.

出版信息

Neural Netw. 2025 Apr;184:107039. doi: 10.1016/j.neunet.2024.107039. Epub 2024 Dec 16.

DOI:10.1016/j.neunet.2024.107039
PMID:39700825
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11802304/
Abstract

Brain magnetic resonance imaging (MRI) has been extensively employed across clinical and research fields, but often exhibits sensitivity to site effects arising from non-biological variations such as differences in field strength and scanner vendors. Numerous retrospective MRI harmonization techniques have demonstrated encouraging outcomes in reducing the site effects at image level. However, existing methods generally suffer from high computational requirements and limited generalizability, restricting their applicability to unseen MRIs. In this paper, we design a novel disentangled latent energy-based style translation (DLEST) framework for unpaired image-level MRI harmonization, consisting of (a) site-invariant image generation (SIG), (b) site-specific style translation (SST), and (c) site-specific MRI synthesis (SMS). Specifically, the SIG employs a latent autoencoder to encode MRIs into a low-dimensional latent space and reconstruct MRIs from latent codes. The SST utilizes an energy-based model to comprehend global latent distribution of a target domain and translate source latent codes towards the target domain, while SMS enables MRI synthesis with a target-specific style. By disentangling image generation and style translation in latent space, the DLEST can achieve efficient style translation. Our model was trained on T1-weighted MRIs from a public dataset (with 3,984 subjects across 58 acquisition sites/settings) and validated on an independent dataset (with 9 traveling subjects scanned in 11 sites/settings) in four tasks: histogram and feature visualization, site classification, brain tissue segmentation, and site-specific structural MRI synthesis. Qualitative and quantitative results demonstrate the superiority of our method over several state-of-the-arts.

摘要

脑磁共振成像(MRI)已在临床和研究领域广泛应用,但通常对由非生物变异(如场强和扫描仪供应商差异)引起的部位效应敏感。众多回顾性MRI归一化技术在减少图像层面的部位效应方面取得了令人鼓舞的成果。然而,现有方法通常存在计算要求高和泛化性有限的问题,限制了它们对未见过的MRI的适用性。在本文中,我们设计了一种新颖的基于解缠潜在能量的风格转换(DLEST)框架,用于非配对图像层面的MRI归一化,该框架由(a)部位不变图像生成(SIG)、(b)部位特定风格转换(SST)和(c)部位特定MRI合成(SMS)组成。具体而言,SIG采用潜在自动编码器将MRI编码到低维潜在空间,并从潜在代码重建MRI。SST利用基于能量的模型理解目标域的全局潜在分布,并将源潜在代码转换为目标域,而SMS则能够以目标特定风格进行MRI合成。通过在潜在空间中解缠图像生成和风格转换,DLEST可以实现高效的风格转换。我们的模型在来自公共数据集(58个采集站点/设置中的3984名受试者)的T1加权MRI上进行训练,并在四个任务中在独立数据集(11个站点/设置中扫描的9名流动受试者)上进行验证:直方图和特征可视化、部位分类、脑组织分割以及部位特定的结构MRI合成。定性和定量结果表明我们的方法优于几种现有技术。