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基于全基因组重测序、RNA测序和蛋白质组测序揭示叶酸合成调控基因DHNA在烟草叶片黄化中的关键作用

Revealing the key role of the folate synthesis regulatory gene DHNA in tobacco leaf yellowing based on BSA-seq, RNA-seq, and proteomic sequencing.

作者信息

Pan Qiuhe, Jia Rongli, Pi Kai, Tang Qin, Zhang Jingyao, Huang Ying, Liu Renxiang

机构信息

College of Tobacco, Guizhou University, Guiyang, 550025, PR China.

Key Laboratory for Tobacco Quality Research Guizhou Province, Guizhou University, Guiyang, 550025, PR China.

出版信息

BMC Plant Biol. 2024 Dec 19;24(1):1211. doi: 10.1186/s12870-024-05917-5.

Abstract

BACKGROUND

The degree of yellowing in tobacco leaves is an important indicator for determining the maturity and harvesting time of tobacco leaves. Decreasing chlorophyll levels helps speed up the ripening process of tobacco leaves for easier mechanical harvesting. Identifying and utilizing genes that regulate yellowing in tobacco leaves are crucial for developing tobacco varieties suitable for mechanized harvesting and understanding the molecular processes that control leaf color changes.

RESULTS

In this study, the phenotypes of the yellow-leaf K326 and K326 varieties were analysed, and it was observed that the yellow-leaf K326 variety exhibited a distinct yellow leaf phenotype with a significant reduction in chlorophyll content. Subsequently, using a combination of BSA-seq, transcriptomic sequencing (RNA-seq), and proteomic sequencing approaches, we identified the candidate gene Nitab4.5_0008674g0010 that encodes dihydroneopterin aldolase as a factor associated with tobacco leaf yellowing. Finally, by measuring the folate content in K326 and Huangye K326, the folate content in Huangye K326 was observed to be significantly lower than that in K326, thus indicating that folate synthesis plays a crucial role in phenotypic changes in tobacco yellow leaves.

CONCLUSIONS

This study is the first to use BSA-seq combined with RNA-seq and proteomic sequencing to identify candidate genes in tobacco yellow leaves. The results provide a theoretical basis for the analysis of the mechanism of tobacco yellow leaf mutations.

摘要

背景

烟叶的变黄程度是确定烟叶成熟度和采收时间的重要指标。降低叶绿素水平有助于加速烟叶的成熟过程,便于机械采收。鉴定和利用调控烟叶变黄的基因对于培育适合机械化采收的烟草品种以及理解控制叶片颜色变化的分子过程至关重要。

结果

本研究分析了黄叶K326和K326品种的表型,观察到黄叶K326品种呈现出明显的黄叶表型,叶绿素含量显著降低。随后,结合BSA-seq、转录组测序(RNA-seq)和蛋白质组测序方法,我们鉴定出编码二氢新蝶呤醛缩酶的候选基因Nitab4.5_0008674g0010是与烟叶变黄相关的一个因子。最后,通过测定K326和黄叶K326中的叶酸含量,观察到黄叶K326中的叶酸含量显著低于K326中的叶酸含量,从而表明叶酸合成在烟草黄叶的表型变化中起关键作用。

结论

本研究首次利用BSA-seq结合RNA-seq和蛋白质组测序来鉴定烟草黄叶中的候选基因。研究结果为分析烟草黄叶突变机制提供了理论依据。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/5f9f/11656980/40d2672b1473/12870_2024_5917_Fig1_HTML.jpg

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