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生物信息学辅助鉴定可水解6-磺酸基-N-乙酰氨基葡萄糖的新型细菌磺基糖苷酶。

Bioinformatics-Facilitated Identification of Novel Bacterial Sulfoglycosidases That Hydrolyze 6-Sulfo--acetylglucosamine.

作者信息

Dong Mochen, Chen Zhuoyun, He Yuan, Zallot Rémi, Jin Yi

机构信息

School of Chemistry, Cardiff University, Cardiff CF10 3AT, United Kingdom.

Manchester Institute of Biotechnology, University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom.

出版信息

ACS Bio Med Chem Au. 2024 Nov 19;4(6):342-352. doi: 10.1021/acsbiomedchemau.4c00088. eCollection 2024 Dec 18.

DOI:10.1021/acsbiomedchemau.4c00088
PMID:39712202
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11659886/
Abstract

Glycan sulfation is a widespread postglycosylation modification crucial for modulating biological functions including cellular adhesion, signaling, and bacterial colonization. 6-Sulfo-β-GlcNAcases are a class of enzyme that alters sulfation patterns. Such changes in sulfation patterns are linked to diseases such as bowel inflammation, colitis, and cancer. Despite their significance, 6-sulfo-β-GlcNAcases, which cleave β-linked 6-sulfo--acetylglucosamine (6S-GlcNAc), have been but rarely identified. This scarcity results mainly from the short, diverse, and distinctive sulfate-binding motifs required for recognition of the 6-sulfate group in 6S-GlcNAc in addition to the conserved GH20 family features. In this study, we discovered 6-sulfo-β-GlcNAcases and assigned two novel sulfate-binding motifs by the use of comparative genomics, structural predictions, and activity-based screening. Our findings expand the known microbiota capable of degrading sulfated glycans and add significant enzymes to the tool kit for analysis and synthesis of sulfated oligosaccharides.

摘要

聚糖硫酸化是一种广泛存在的糖基化后修饰,对调节包括细胞黏附、信号传导和细菌定殖在内的生物学功能至关重要。6-磺基-β-葡萄糖胺酶是一类能够改变硫酸化模式的酶。这种硫酸化模式的改变与肠道炎症、结肠炎和癌症等疾病有关。尽管其具有重要意义,但能够切割β-连接的6-磺基-N-乙酰葡萄糖胺(6S-GlcNAc)的6-磺基-β-葡萄糖胺酶却很少被鉴定出来。这种稀缺主要是由于除了保守的GH20家族特征外,识别6S-GlcNAc中6-硫酸基团还需要短的、多样的和独特的硫酸盐结合基序。在本研究中,我们通过比较基因组学、结构预测和基于活性的筛选发现了6-磺基-β-葡萄糖胺酶,并确定了两个新的硫酸盐结合基序。我们的发现扩展了已知的能够降解硫酸化聚糖的微生物群,并为硫酸化寡糖的分析和合成工具包增添了重要的酶。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/c82b686a7540/bg4c00088_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/9628555480fe/bg4c00088_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/408d8f74160f/bg4c00088_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/135b14c21105/bg4c00088_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/2a3eb62d0fe8/bg4c00088_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/c82b686a7540/bg4c00088_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/9628555480fe/bg4c00088_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/408d8f74160f/bg4c00088_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/135b14c21105/bg4c00088_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/2a3eb62d0fe8/bg4c00088_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ce7e/11659886/c82b686a7540/bg4c00088_0005.jpg

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