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基于机理的纤维素酶反应双指数进展曲线拟合模型

Mechanism-based Modelling for Fitting the Double-exponential Progress Curves of Cellulase Reaction.

作者信息

Igarashi Kiyohiko, Ezaki Takahiro, Samejima Masahiro

机构信息

1 Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo.

2 Division of Advanced Logistics Science, Research Center for Advanced Science and Technology, The University of Tokyo.

出版信息

J Appl Glycosci (1999). 2024 Nov 20;71(4):103-110. doi: 10.5458/jag.jag.JAG-2024_0007. eCollection 2024.

Abstract

Enzymatic hydrolysis of cellulosic biomass is a complex process involving many factors, including multiple enzymes, heterogeneous substrates, and multi-step enzyme reactions. Cellulase researchers have conventionally used a double-exponential equation to fit the experimental time course of product formation, but no theoretical basis for this has been established. Here we present a mechanism-based equation that fits well the progress curves of cellulase reaction, incorporating the concepts of non-productive and productive binding on the cellulose surface and processivity. The derived equation is double exponential. Our findings indicate that the reaction mechanism of cellulase itself can account for the double-exponential nature of the progress curve independently of other factors that may contribute, such as substrate heterogeneity and involvement of other enzymes.

摘要

纤维素生物质的酶促水解是一个复杂的过程,涉及许多因素,包括多种酶、异质底物和多步酶反应。纤维素酶研究人员传统上使用双指数方程来拟合产物形成的实验时间进程,但尚未建立其理论基础。在此,我们提出了一个基于机制的方程,该方程能很好地拟合纤维素酶反应的进程曲线,纳入了纤维素表面非生产性和生产性结合以及持续性的概念。推导得到的方程是双指数的。我们的研究结果表明,纤维素酶本身的反应机制可以独立于其他可能起作用的因素(如底物异质性和其他酶的参与)来解释进程曲线的双指数性质。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e643/11664118/6ebd55846173/JAG-71-103-g01.jpg

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