Department of Biomaterial Sciences, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo 113-8657, Japan.
Department of Physics and Structural Biology Research Center, Nagoya University, Chikusa-ku, Nagoya 464-8602, Japan.
Proc Natl Acad Sci U S A. 2020 Aug 18;117(33):19896-19903. doi: 10.1073/pnas.2011366117. Epub 2020 Aug 3.
Cellulose is the most abundant biomass on Earth, and many microorganisms depend on it as a source of energy. It consists mainly of crystalline and amorphous regions, and natural degradation of the crystalline part is highly dependent on the degree of processivity of the degrading enzymes (i.e., the extent of continuous hydrolysis without detachment from the substrate cellulose). Here, we report high-speed atomic force microscopic (HS-AFM) observations of the movement of four types of cellulases derived from the cellulolytic bacteria on various insoluble cellulose substrates. The HS-AFM images clearly demonstrated that two of them (Cel6B and Cel48A) slide on crystalline cellulose. The direction of processive movement of Cel6B is from the nonreducing to the reducing end of the substrate, which is opposite that of processive cellulase Cel7A of the fungus (Cel7A), whose movement was first observed by this technique, while Cel48A moves in the same direction as Cel7A. When Cel6B and Cel7A were mixed on the same substrate, "traffic accidents" were observed, in which the two cellulases blocked each other's progress. The processivity of Cel6B was similar to those of fungal family 7 cellulases but considerably higher than those of fungal family 6 cellulases. The results indicate that bacteria utilize family 6 cellulases as high-processivity enzymes for efficient degradation of crystalline cellulose, whereas family 7 enzymes have the same function in fungi. This is consistent with the idea of convergent evolution of processive cellulases in fungi and bacteria to achieve similar functionality using different protein foldings.
纤维素是地球上最丰富的生物质,许多微生物依赖它作为能量来源。它主要由结晶区和无定形区组成,天然降解的结晶区高度依赖于降解酶的(即连续水解而不脱离纤维素底物的程度)程度。在这里,我们报告了来自纤维素分解细菌的四种纤维素酶在各种不溶性纤维素底物上的高速原子力显微镜(HS-AFM)观察。HS-AFM 图像清楚地表明,其中两种(Cel6B 和 Cel48A)在结晶纤维素上滑动。Cel6B 的连续运动方向是从非还原端到还原端,与真菌的连续纤维素酶 Cel7A 相反(Cel7A),其运动首先通过该技术观察到,而 Cel48A 的运动方向与 Cel7A 相同。当 Cel6B 和 Cel7A 混合在相同的底物上时,观察到“交通事故”,其中两种纤维素酶相互阻碍对方的进展。Cel6B 的连续性与真菌家族 7 纤维素酶相似,但明显高于真菌家族 6 纤维素酶。结果表明,细菌利用家族 6 纤维素酶作为高效降解结晶纤维素的高连续性酶,而家族 7 酶在真菌中具有相同的功能。这与真菌和细菌中连续纤维素酶的趋同进化思想一致,即用不同的蛋白质折叠实现相似的功能。