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Deep Learning Model for Predicting Immunotherapy Response in Advanced Non-Small Cell Lung Cancer.

作者信息

Rakaee Mehrdad, Tafavvoghi Masoud, Ricciuti Biagio, Alessi Joao V, Cortellini Alessio, Citarella Fabrizio, Nibid Lorenzo, Perrone Giuseppe, Adib Elio, Fulgenzi Claudia A M, Hidalgo Filho Cassio Murilo, Di Federico Alessandro, Jabar Falah, Hashemi Sayed, Houda Ilias, Richardsen Elin, Rasmussen Busund Lill-Tove, Donnem Tom, Bahce Idris, Pinato David J, Helland Åslaug, Sholl Lynette M, Awad Mark M, Kwiatkowski David J

机构信息

Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, Massachusetts.

Department of Cancer Genetics, Oslo University Hospital, Oslo, Norway.

出版信息

JAMA Oncol. 2025 Feb 1;11(2):109-118. doi: 10.1001/jamaoncol.2024.5356.


DOI:10.1001/jamaoncol.2024.5356
PMID:39724105
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11843371/
Abstract

IMPORTANCE: Only a small fraction of patients with advanced non-small cell lung cancer (NSCLC) respond to immune checkpoint inhibitor (ICI) treatment. For optimal personalized NSCLC care, it is imperative to identify patients who are most likely to benefit from immunotherapy. OBJECTIVE: To develop a supervised deep learning-based ICI response prediction method; evaluate its performance alongside other known predictive biomarkers; and assess its association with clinical outcomes in patients with advanced NSCLC. DESIGN, SETTING, AND PARTICIPANTS: This multicenter cohort study developed and independently validated a deep learning-based response stratification model for predicting ICI treatment outcome in patients with advanced NSCLC from whole slide hematoxylin and eosin-stained images. Images for model development and validation were obtained from 1 participating center in the US and 3 in the European Union (EU) from August 2014 to December 2022. Data analyses were performed from September 2022 to May 2024. EXPOSURE: Monotherapy with ICIs. MAIN OUTCOMES AND MEASURES: Model performance measured by clinical end points and objective response rate (ORR) differentiation power vs other predictive biomarkers, ie, programmed death-ligand 1 (PD-L1), tumor mutational burden (TMB), and tumor-infiltrating lymphocytes (TILs). RESULTS: A total of 295 581 image tiles from 958 patients (mean [SD] age, 66.0 [10.6] years; 456 [48%] females and 502 [52%] males) treated with ICI for NSCLC were included in the analysis. The US-based development cohort consisted of 614 patients with median (IQR) follow-up time of 54.5 (38.2-68.1) months, and the EU-based validation cohort, 344 patients with 43.3 (27.4-53.9) months of follow-up. The ORR to ICI was 26% in the developmental cohort and 28% in the validation cohort. The deep learning model's area under the receiver operating characteristic curve (AUC) for ORR was 0.75 (95% CI, 0.64-0.85) in the internal test set and 0.66 (95% CI, 0.60-0.72) in the validation cohort. In a multivariable analysis, the deep learning model's score was an independent predictor of ICI response in the validation cohort for both progression-free (hazard ratio, 0.56; 95% CI, 0.42-0.76; P < .001) and overall survival (hazard ratio, 0.53; 95% CI, 0.39-0.73; P < .001). The tuned deep learning model achieved a higher AUC than TMB, TILs, and PD-L1 in the internal set; in the validation cohort, it was superior to TILs and comparable with PD-L1 (AUC, 0.67; 95% CI, 0.60-0.74), with a 10-percentage point improvement in specificity. In the validation cohort, combining the deep learning model with PD-L1 scores achieved an AUC of 0.70 (95% CI, 0.63-0.76), outperforming either marker alone, with a response rate of 51% compared to 41% for PD-L1 (≥50%) alone. CONCLUSIONS AND RELEVANCE: The findings of this cohort study demonstrate a strong and independent deep learning-based feature associated with ICI response in patients with NSCLC across various cohorts. Clinical use of this deep learning model could refine treatment precision and better identify patients who are likely to benefit from ICI for treatment of advanced NSCLC.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/1d4f0c72dc63/jamaoncol-e245356-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/75f2ae2aa874/jamaoncol-e245356-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/da7ca92be5c8/jamaoncol-e245356-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/1d4f0c72dc63/jamaoncol-e245356-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/75f2ae2aa874/jamaoncol-e245356-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/da7ca92be5c8/jamaoncol-e245356-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/54d4/11843371/1d4f0c72dc63/jamaoncol-e245356-g003.jpg

相似文献

[1]
Deep Learning Model for Predicting Immunotherapy Response in Advanced Non-Small Cell Lung Cancer.

JAMA Oncol. 2025-2-1

[2]
Association of Machine Learning-Based Assessment of Tumor-Infiltrating Lymphocytes on Standard Histologic Images With Outcomes of Immunotherapy in Patients With NSCLC.

JAMA Oncol. 2023-1-1

[3]
Single or combined immune checkpoint inhibitors compared to first-line platinum-based chemotherapy with or without bevacizumab for people with advanced non-small cell lung cancer.

Cochrane Database Syst Rev. 2020-12-14

[4]
Single or combined immune checkpoint inhibitors compared to first-line platinum-based chemotherapy with or without bevacizumab for people with advanced non-small cell lung cancer.

Cochrane Database Syst Rev. 2021-4-30

[5]
Association of Survival and Immune-Related Biomarkers With Immunotherapy in Patients With Non-Small Cell Lung Cancer: A Meta-analysis and Individual Patient-Level Analysis.

JAMA Netw Open. 2019-7-3

[6]
Robust Prediction of Immune Checkpoint Inhibition Therapy for Non-Small Cell Lung Cancer.

Front Immunol. 2021

[7]
Assessing PD-L1 expression in non-small cell lung cancer and predicting responses to immune checkpoint inhibitors using deep learning on computed tomography images.

Theranostics. 2021

[8]
Deep learning analysis of histopathological images predicts immunotherapy prognosis and reveals tumour microenvironment features in non-small cell lung cancer.

Br J Cancer. 2024-12

[9]
Genomic scoring to determine clinical benefit of immunotherapy by targeted sequencing.

Eur J Cancer. 2019-9-4

[10]
Integration of comprehensive genomic profiling, tumor mutational burden, and PD-L1 expression to identify novel biomarkers of immunotherapy in non-small cell lung cancer.

Cancer Med. 2021-4

引用本文的文献

[1]
MED12-STAT1-TAP2 axis regulates CD8 + T cell cytotoxicity and mediates immunotherapy outcome in non-small cell lung cancer.

Funct Integr Genomics. 2025-9-1

[2]
Trastuzumab deruxtecan for the treatment of metastatic non-small cell lung cancer harboring non-exon 19/20 mutations: four case reports.

Front Immunol. 2025-8-12

[3]
Clinically Explainable Prediction of Immunotherapy Response Integrating Radiomics and Clinico-Pathological Information in Non-Small Cell Lung Cancer.

Cancers (Basel). 2025-8-18

[4]
Artificial Intelligence and Machine Learning Approaches in Designing Immunotherapy in Cancer.

Cancer Treat Res. 2025

[5]
Applied intelligence in clinical drug development: Potential benefits and emerging concerns.

Perspect Clin Res. 2025

[6]
[Recent Advances in Peripheral Immunoscore in Lung Cancer].

Zhongguo Fei Ai Za Zhi. 2025-5-20

本文引用的文献

[1]
Artificial intelligence for predictive biomarker discovery in immuno-oncology: a systematic review.

Ann Oncol. 2024-1

[2]
Enzyme-mediated depletion of methylthioadenosine restores T cell function in MTAP-deficient tumors and reverses immunotherapy resistance.

Cancer Cell. 2023-10-9

[3]
Machine learning-based immune phenotypes correlate with STK11/KEAP1 co-mutations and prognosis in resectable NSCLC: a sub-study of the TNM-I trial.

Ann Oncol. 2023-7

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Generalizable biomarker prediction from cancer pathology slides with self-supervised deep learning: A retrospective multi-centric study.

Cell Rep Med. 2023-4-18

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Advances in artificial intelligence to predict cancer immunotherapy efficacy.

Front Immunol. 2022

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Non-oncogene-addicted metastatic non-small-cell lung cancer: ESMO Clinical Practice Guideline for diagnosis, treatment and follow-up.

Ann Oncol. 2023-4

[7]
Neoadjuvant pembrolizumab shows promise in MSI-H/dMMR solid tumours.

Nat Rev Clin Oncol. 2023-3

[8]
Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma.

Ann Oncol. 2023-3

[9]
Association of Machine Learning-Based Assessment of Tumor-Infiltrating Lymphocytes on Standard Histologic Images With Outcomes of Immunotherapy in Patients With NSCLC.

JAMA Oncol. 2023-1-1

[10]
Cemiplimab plus chemotherapy versus chemotherapy alone in non-small cell lung cancer: a randomized, controlled, double-blind phase 3 trial.

Nat Med. 2022-11

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