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通过对生物医学基础模型进行参数高效微调增强骨质疏松性椎体压缩骨折后椎体塌陷的预测

Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models.

作者信息

Kim Sibeen, Kim Inkyeong, Yuh Woon Tak, Han Sangmin, Kim Choonghyo, Ko Young San, Cho Wonwoo, Park Sung Bae

机构信息

School of Biomedical Engineering, Korea University, Seoul, Republic of Korea.

Department of Neurosurgery, Kangwon National University Hospital, Chuncheon-si, Gangwon-do, Republic of Korea.

出版信息

Sci Rep. 2024 Dec 30;14(1):31820. doi: 10.1038/s41598-024-82902-w.

DOI:10.1038/s41598-024-82902-w
PMID:39738257
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11685640/
Abstract

Vertebral collapse (VC) following osteoporotic vertebral compression fracture (OVCF) often requires aggressive treatment, necessitating an accurate prediction for early intervention. This study aimed to develop a predictive model leveraging deep neural networks to predict VC progression after OVCF using magnetic resonance imaging (MRI) and clinical data. Among 245 enrolled patients with acute OVCF, data from 200 patients were used for the development dataset, and data from 45 patients were used for the test dataset. To construct an accurate prediction model, we explored two backbone architectures: convolutional neural networks and vision transformers (ViTs), along with various pre-trained weights and fine-tuning methods. Through extensive experiments, we built our model by performing parameter-efficient fine-tuning of a ViT model pre-trained on a large-scale biomedical dataset. Attention rollouts indicated that the contours and internal features of the compressed vertebral body were critical in predicting VC with this model. To further improve the prediction performance of our model, we applied the augmented prediction strategy, which uses multiple MRI frames and achieves a significantly higher area under the curve (AUC). Our findings suggest that employing a biomedical foundation model fine-tuned using a parameter-efficient method, along with augmented prediction, can significantly enhance medical decisions.

摘要

骨质疏松性椎体压缩骨折(OVCF)后的椎体塌陷(VC)通常需要积极治疗,因此需要进行准确预测以便早期干预。本研究旨在开发一种利用深度神经网络的预测模型,使用磁共振成像(MRI)和临床数据预测OVCF后的VC进展。在245名纳入研究的急性OVCF患者中,200名患者的数据用于开发数据集,45名患者的数据用于测试数据集。为构建准确的预测模型,我们探索了两种骨干架构:卷积神经网络和视觉Transformer(ViT),以及各种预训练权重和微调方法。通过广泛实验,我们通过对在大规模生物医学数据集上预训练的ViT模型进行参数高效微调来构建模型。注意力展示表明,压缩椎体的轮廓和内部特征对于用该模型预测VC至关重要。为进一步提高我们模型的预测性能,我们应用了增强预测策略,该策略使用多个MRI帧并显著提高了曲线下面积(AUC)。我们的研究结果表明,采用通过参数高效方法微调的生物医学基础模型以及增强预测,可以显著改善医疗决策。

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Augmented prediction of vertebral collapse after osteoporotic vertebral compression fractures through parameter-efficient fine-tuning of biomedical foundation models.通过对生物医学基础模型进行参数高效微调增强骨质疏松性椎体压缩骨折后椎体塌陷的预测
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本文引用的文献

1
Development of a deep learning model for detecting lumbar vertebral fractures on CT images: An external validation.基于 CT 图像的深度学习模型检测腰椎骨折:一项外部验证。
Eur J Radiol. 2024 Nov;180:111685. doi: 10.1016/j.ejrad.2024.111685. Epub 2024 Aug 15.
2
Comparative analysis of vision transformers and convolutional neural networks in osteoporosis detection from X-ray images.比较分析 X 射线图像中基于视觉转换器和卷积神经网络的骨质疏松检测。
Sci Rep. 2024 Aug 3;14(1):18007. doi: 10.1038/s41598-024-69119-7.
3
Development and validation of a predictive model for vertebral fracture risk in osteoporosis patients.
开发和验证骨质疏松症患者椎体骨折风险的预测模型。
Eur Spine J. 2024 Aug;33(8):3242-3260. doi: 10.1007/s00586-024-08235-4. Epub 2024 Jul 2.
4
An Automated Multi-scale Feature Fusion Network for Spine Fracture Segmentation Using Computed Tomography Images.基于 CT 图像的脊柱骨折分割的自动化多尺度特征融合网络。
J Imaging Inform Med. 2024 Oct;37(5):2216-2226. doi: 10.1007/s10278-024-01091-0. Epub 2024 Apr 15.
5
A Deep-Learning Model for Diagnosing Fresh Vertebral Fractures on Magnetic Resonance Images.基于深度学习的磁共振影像中新鲜椎体骨折诊断模型
World Neurosurg. 2024 Mar;183:e818-e824. doi: 10.1016/j.wneu.2024.01.035. Epub 2024 Jan 11.
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A novel deep learning model for a computed tomography diagnosis of coronary plaque erosion.一种用于冠状动脉斑块侵蚀计算机断层诊断的新型深度学习模型。
Sci Rep. 2023 Dec 27;13(1):22992. doi: 10.1038/s41598-023-50483-9.
7
An Automated Deep Learning Approach for Spine Segmentation and Vertebrae Recognition Using Computed Tomography Images.一种使用计算机断层扫描图像进行脊柱分割和椎体识别的自动化深度学习方法。
Diagnostics (Basel). 2023 Aug 12;13(16):2658. doi: 10.3390/diagnostics13162658.
8
Clinical application of bone turnover markers in treating osteoporotic vertebral compression fractures and their role in predicting fracture progression.骨转换标志物在治疗骨质疏松性椎体压缩骨折中的临床应用及其对骨折进展的预测作用。
Medicine (Baltimore). 2022 Aug 12;101(32):e29983. doi: 10.1097/MD.0000000000029983.
9
Self-supervised learning in medicine and healthcare.医学和医疗保健中的自我监督学习。
Nat Biomed Eng. 2022 Dec;6(12):1346-1352. doi: 10.1038/s41551-022-00914-1. Epub 2022 Aug 11.
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