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生命计划:一项全球生物多样性采样设计。

LIFEPLAN: A worldwide biodiversity sampling design.

作者信息

Hardwick Bess, Kerdraon Deirdre, Rogers Hanna M K, Raharinjanahary Dimby, Rajoelison Eric Tsiriniaina, Mononen Tommi, Lehikoinen Petteri, Banelyte Gaia, Farrell Arielle, Fisher Brian L, Roslin Tomas, Ovaskainen Otso

机构信息

Organismal and Evolutionary Biology Research Programme, University of Helsinki, Helsinki, Finland.

Department of Ecology, Swedish University of Agricultural Sciences, Uppsala, Sweden.

出版信息

PLoS One. 2024 Dec 31;19(12):e0313353. doi: 10.1371/journal.pone.0313353. eCollection 2024.

Abstract

As the technology for mass identification of species is advancing rapidly, we developed a field sampling method that takes advantage of the emerging possibilities of combining sensor-based data with automated high-throughput data processing. This article describes the five field sampling methods used by the LIFEPLAN project to collect biodiversity data in a systematic manner, all over the world. These methods are designed for use by anyone with basic biology or ecology knowledge from the higher education or university level. We present the selection and characteristics of international sampling locations for urban and natural sites, as well as the nested scale design in the Nordic countries and Madagascar. We describe the steps to collect sequences of animal images (.jpg) from infrared triggered camera traps, audio data (.WAV) of environment sounds from audio recorders, invertebrate samples in ethanol from Malaise traps for DNA metabarcoding, as well as both soil samples and 24-hour air samples obtained from cyclone samplers for fungal DNA metabarcoding. To ensure the usability and consistency of the data for future use, we pay particular attention to the metadata collected. In specifying the current sampling protocols, we note that technology will continue to improve and evolve. Hardware will also change within a short time period, with the advantage of improving the equipment used for collecting samples. Thus, we present examples of the samples collected by each current sampling method, to be used as a baseline or in comparison with different equipment models.

摘要

随着物种大规模鉴定技术的迅速发展,我们开发了一种野外采样方法,该方法利用了将基于传感器的数据与自动化高通量数据处理相结合的新可能性。本文介绍了LIFEPLAN项目在全球范围内系统收集生物多样性数据所使用的五种野外采样方法。这些方法供任何具有高等教育或大学水平的基础生物学或生态学知识的人使用。我们介绍了城市和自然地点国际采样地点的选择和特征,以及北欧国家和马达加斯加的嵌套尺度设计。我们描述了从红外触发相机陷阱收集动物图像序列(.jpg)、从录音机收集环境声音的音频数据(.WAV)、从马氏网诱捕器收集用于DNA宏条形码分析的乙醇中的无脊椎动物样本,以及从气旋采样器获得用于真菌DNA宏条形码分析的土壤样本和24小时空气样本的步骤。为确保数据在未来使用的可用性和一致性,我们特别关注所收集的元数据。在指定当前的采样协议时,我们注意到技术将继续改进和发展。硬件也将在短时间内发生变化,其优点是改进用于收集样本的设备。因此,我们展示了每种当前采样方法所收集样本的示例,用作基线或与不同设备型号进行比较。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ac36/11687782/caf5a35c541d/pone.0313353.g004.jpg

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