Przanowska Róża K, Labban Najwa, Przanowski Piotr, Hawes Russell B, Atkins Kristen A, Showalter Shayna L, Janes Kevin A
Department of Biomedical Engineering, University of Virginia, Charlottesville, VA, 22908, USA.
Department of Pathology, University of Virginia, Charlottesville, VA, 22908, USA.
Breast Cancer Res. 2024 Dec 31;26(1):192. doi: 10.1186/s13058-024-01931-5.
BACKGROUND: Primary luminal breast cancer cells lose their identity rapidly in standard tissue culture, which is problematic for testing hormone interventions and molecular pathways specific to the luminal subtype. Breast cancer organoids are thought to retain tumor characteristics better, but long-term viability of luminal-subtype cases is a persistent challenge. Our goal was to adapt short-term organoids of luminal breast cancer for parallel testing of genetic and pharmacologic perturbations. METHODS: We freshly isolated patient-derived cells from luminal tumor scrapes, miniaturized the organoid format into 5 µl replicates for increased throughput, and set an endpoint of 14 days to minimize drift. Therapeutic hormone targeting was mimicked in these "zero-passage" organoids by withdrawing β-estradiol and adding 4-hydroxytamoxifen. We also examined sulforaphane as an electrophilic stress and commercial nutraceutical with reported anti-cancer properties. Downstream mechanisms were tested genetically by lentiviral transduction of two complementary sgRNAs and Cas9 stabilization for the first week of organoid culture. Transcriptional changes were measured by RT-qPCR or RNA sequencing (RNA-seq), and organoid phenotypes were quantified by serial brightfield imaging, digital image segmentation, and regression modeling of volumetric growth rates. RESULTS: We achieved > 50% success in initiating luminal breast cancer organoids from tumor scrapes and maintaining them to the 14-day zero-passage endpoint. Success was mostly independent of clinical parameters, supporting general applicability of the approach. Abundance of ESR1 and PGR in zero-passage organoids consistently remained within the range of patient variability at the endpoint. However, responsiveness to hormone withdrawal and blockade was highly variable among luminal breast cancer cases tested. Combining sulforaphane with knockout of NQO1 (a phase II antioxidant response gene and downstream effector of sulforaphane) also yielded a breadth of organoid growth phenotypes, including growth inhibition with sulforaphane, growth promotion with NQO1 knockout, and growth antagonism when combined. CONCLUSIONS: Zero-passage organoids are a rapid and scalable way to interrogate properties of luminal breast cancer cells from patient-derived material. This includes testing drug mechanisms of action in different clinical cohorts. A future goal is to relate inter-patient variability of zero-passage organoids to long-term outcomes.
背景:原发性管腔型乳腺癌细胞在标准组织培养中会迅速丧失其特性,这对于测试激素干预措施和管腔亚型特有的分子途径来说是个问题。乳腺癌类器官被认为能更好地保留肿瘤特征,但管腔亚型病例的长期存活能力一直是个挑战。我们的目标是改造管腔型乳腺癌的短期类器官,以便对基因和药物干扰进行平行测试。 方法:我们从管腔型肿瘤刮片中新鲜分离出患者来源的细胞,将类器官形式微型化为5微升的复制品以提高通量,并设定14天的终点以尽量减少变化。在这些“零传代”类器官中,通过去除β-雌二醇并添加4-羟基他莫昔芬来模拟治疗性激素靶向。我们还研究了萝卜硫素,它是一种亲电应激物质和具有抗癌特性的商业营养保健品。在类器官培养的第一周,通过慢病毒转导两个互补的sgRNA和Cas9稳定化对下游机制进行基因测试。通过RT-qPCR或RNA测序(RNA-seq)测量转录变化,并通过连续明场成像、数字图像分割和体积生长率的回归建模对类器官表型进行量化。 结果:我们成功地从肿瘤刮片中启动管腔型乳腺癌类器官并将其维持到14天的零传代终点,成功率超过50%。成功大多与临床参数无关,这支持了该方法的普遍适用性。零传代类器官中ESR1和PGR的丰度在终点时始终保持在患者变异范围内。然而,在测试的管腔型乳腺癌病例中,对激素撤除和阻断的反应性差异很大。将萝卜硫素与NQO1(一种II期抗氧化反应基因和萝卜硫素的下游效应物)敲除相结合也产生了广泛的类器官生长表型,包括萝卜硫素抑制生长、NQO1敲除促进生长以及两者结合时的生长拮抗作用。 结论:零传代类器官是一种快速且可扩展的方法,用于从患者来源的材料中探究管腔型乳腺癌细胞的特性。这包括在不同临床队列中测试药物作用机制。未来的目标是将零传代类器官的患者间变异性与长期结果联系起来。
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