Oliveira José A C, Negreiro Jonatas M, Nunes Fátima M, Barbosa Francisco G, Mafezoli Jair, Mattos Marcos C, Fernandes Maria C R, Pessoa Claudia, Furtado Cristiana L M, Zanatta Geancarlo, Oliveira Maria C F
Department of Organic and Inorganic Chemistry, Science Center, Federal University of Ceará, Fortaleza, CE 60455-760, Brazil.
Drug Research and Development Center, Federal University of Ceará, Rua Coronel Nunes de Melo, 1000, Fortaleza, CE 60430-275, Brazil.
ACS Omega. 2024 Dec 12;9(51):50844-50858. doi: 10.1021/acsomega.4c10201. eCollection 2024 Dec 24.
One of the most investigated molecular targets for anticancer therapy is the proto-oncogene , which is amplified and thus overexpressed in many types of cancer. Due to its structural characteristics, developing inhibitors for the target has proven to be challenging. In this study, the anti-MYC potential of lanostane-type triterpenes was investigated for the first time, using computational approaches that involved ensemble docking, prediction of structural properties and pharmacokinetic parameters, molecular dynamics (MD), and binding energy calculation using the molecular mechanics-generalized born surface area (MM-GBSA) method. The analysis of physicochemical properties, druglikeness, and pharmacokinetic parameters showed that ligands ganoderic acid E (), ganoderlactone D (), ganoderic acid Y (), ganoderic acid Df (), lucidenic acid F (), ganoderic acid XL (), mariesiic acid A (), and phellinol E () presented properties within the filter used. These eight ligands, in general, could interact with the molecular target favorably, with interaction energy values between -8.3 and -8.6 kcal mol. In MD, the results of RMSD, RMSF, radius of gyration, and hydrogen bonds of the complexes revealed that ligands , , , and interacted satisfactorily with the protein during the simulations and assisted in its conformational and energetic stabilization. The binding energy calculation using the MM-GBSA method showed better results for the MYC- and MYC- complexes (-44.98 and -41.96 kcal mol, respectively). These results support the hypothesis that such molecules can interact with MYC for a considerable period, which would be an essential condition for them to exert their inhibitory activity effectively.
抗癌治疗中研究最多的分子靶点之一是原癌基因,它在多种癌症中发生扩增并因此过度表达。由于其结构特征,开发针对该靶点的抑制剂已被证明具有挑战性。在本研究中,首次使用包括集合对接、结构性质和药代动力学参数预测、分子动力学(MD)以及使用分子力学-广义玻恩表面面积(MM-GBSA)方法进行结合能计算等计算方法,研究了羊毛甾烷型三萜的抗MYC潜力。对物理化学性质、类药性和药代动力学参数的分析表明,配体灵芝酸E()、灵芝内酯D()、灵芝酸Y()、灵芝酸Df()、光泽酸F()、灵芝酸XL()、马里酸A()和栓菌醇E()呈现出在所使用的筛选范围内的性质。一般来说,这八个配体能够与分子靶点良好地相互作用,相互作用能值在-8.3至-8.6 kcal/mol之间。在分子动力学中,复合物的均方根偏差(RMSD)、均方根波动(RMSF)、回转半径和氢键的结果表明,配体、、和在模拟过程中与蛋白质的相互作用令人满意,并有助于其构象和能量稳定。使用MM-GBSA方法进行的结合能计算显示,对于MYC-和MYC-复合物,结果更好(分别为-44.98和-41.96 kcal/mol)。这些结果支持了这样的假设,即这些分子可以在相当长的时间内与MYC相互作用,这将是它们有效发挥抑制活性的必要条件。