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单一GAF结构域光敏色素在毫秒时间尺度上表现出pH依赖性分流。

Single GAF Domain Phytochrome Exhibits a pH-Dependent Shunt on the Millisecond Timescale.

作者信息

Trunk Florian, Köhler Lisa, Fischer Tobias, Gärtner Wolfgang, Song Chen, Slavov Chavdar, Wachtveitl Josef

机构信息

Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt am Main, Max-von-Laue-Straße 7, 60438, Frankfurt, Germany.

Institute for Analytical Chemistry, University of Leipzig, Linnéstraße 3, 04103, Leipzig, Germany.

出版信息

Chemphyschem. 2025 Mar 15;26(6):e202401022. doi: 10.1002/cphc.202401022. Epub 2025 Jan 15.

DOI:10.1002/cphc.202401022
PMID:39744913
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11913468/
Abstract

The light-sensing activity of phytochromes is based on the reversible light-induced switching between two isomerization states of the bilin chromophore. These photo-transformations may not necessarily be only unidirectional, but could potentially branch back to the initial ground state in a thermally driven process termed shunt. Such shunts have been rarely reported, and thus our understanding of this process and its governing factors are limited. Here, we aim to close this gap by providing coherent experimental evidence of a shunt process using UV/Vis laser flash photolysis. We studied the Pfr to Pr dynamics of the single GAF domain (g1) construct of the knotless phytochrome All2699 from cyanobacterium Nostoc punctiforme. We identified a shunt that can be switched on and off by ambient buffer conditions. In combination with H/D exchange and kinetic modeling, we propose a keto-enol tautomerism to allow for the thermal isomerization of the chromophore and act as the driver of the shunt transition.

摘要

光敏色素的光感应活性基于胆色素发色团两种异构化状态之间可逆的光诱导转换。这些光转化不一定只是单向的,而是有可能在一个称为“分流”的热驱动过程中回到初始基态。这种分流很少被报道,因此我们对这一过程及其控制因素的理解有限。在这里,我们旨在通过使用紫外/可见激光闪光光解提供分流过程的连贯实验证据来填补这一空白。我们研究了来自点状念珠藻的无结光敏色素All2699的单个GAF结构域(g1)构建体从Pfr到Pr的动力学。我们发现了一种可以通过环境缓冲条件打开和关闭的分流。结合氢/氘交换和动力学建模,我们提出了一种酮-烯醇互变异构,以实现发色团的热异构化,并作为分流转变的驱动因素。

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本文引用的文献

1
Two-photon Absorption and Photoionization of a Bacterial Phytochrome.双光子吸收和一种细菌光光色素的光电离。
J Mol Biol. 2024 Mar 1;436(5):168357. doi: 10.1016/j.jmb.2023.168357. Epub 2023 Nov 7.
2
Influence of the PHY domain on the ms-photoconversion dynamics of a knotless phytochrome.PHY 结构域对 knotless 光敏色素的 ms-photoconversion 动力学的影响。
Photochem Photobiol Sci. 2022 Sep;21(9):1627-1636. doi: 10.1007/s43630-022-00245-9. Epub 2022 Jun 10.
3
Ultrafast Photoconversion Dynamics of the Knotless Phytochrome Cph2.
knotless 植光 Cph2 的超快光致转换动力学。
Int J Mol Sci. 2021 Oct 2;22(19):10690. doi: 10.3390/ijms221910690.
4
Light- and temperature-dependent dynamics of chromophore and protein structural changes in bathy phytochrome Agp2.深海藻胆色素蛋白Agp2中发色团与蛋白质结构变化的光和温度依赖性动力学
Phys Chem Chem Phys. 2021 Sep 7;23(33):18197-18205. doi: 10.1039/d1cp02494a. Epub 2021 Aug 17.
5
Effect of the PHY Domain on the Photoisomerization Step of the Forward P →P Conversion of a Knotless Phytochrome.无环藻光敏色素正向 P→P 构象转变中 PHY 结构域对光异构化步骤的影响。
Chemistry. 2020 Dec 18;26(71):17261-17266. doi: 10.1002/chem.202003138. Epub 2020 Nov 27.
6
The interplay between chromophore and protein determines the extended excited state dynamics in a single-domain phytochrome.发色团和蛋白质之间的相互作用决定了单结构域光光色素中扩展激发态的动力学。
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7
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J Phys Chem B. 2020 May 21;124(20):4044-4055. doi: 10.1021/acs.jpcb.0c01059. Epub 2020 May 8.
8
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