Mitra Ruchira, Xu Yang, Lin Lin, Guo Jing, Xu Tong, Zhou Mengkai, Guo Feng, Li Hao, Xiang Hua, Han Jing
State Key Laboratory of Microbial Resources, Institute of Microbiology, Chinese Academy of Sciences, Beijing, Beijing, China.
International College, University of the Chinese Academy of Sciences, Beijing, Beijing, China.
Appl Environ Microbiol. 2025 Jan 31;91(1):e0184324. doi: 10.1128/aem.01843-24. Epub 2024 Dec 31.
Acetate/acetyl-CoA interconversion is an interesting metabolic node, primarily catalyzed by a set of various enzymes in prokaryotes. is a promising haloarchaeaon, capable of utilizing acetate as a sole carbon source for biosynthesis of high value-added products. Here, we have reported the key enzymes that catalyzed acetate activation in . Based on bioinformatic and transcript analysis, thirteen possible candidate genes were screened. Simultaneous deletion of eleven genes led to a mutant strain (named as Δ11) that failed to grow on acetate. Gene complementation in Δ11 revealed six AMP-ACS (encoded by HFX_0870, HFX_1242, HFX_1451, HFX_6342, HFX_5131, and HFX_1643) and one ADP-ACS (encoded by HFX_0998) to be functional in acetate activation. Furthermore, heterologous expression of ADP-ACS genes from and catalyzed acetate activation in Δ11. Subsequently, it was observed that, deletion of the six AMP-ACS genes in ceased the cell growth of the resulting mutant (Δ6AMP-ACS) on acetate. An function of ADP-ACS in acetate activation could be excluded since ADP-ACS was downregulated on acetate. However, plasmid-based overexpression of ADP-ACS enabled Δ6AMP-ACS to grow on acetate, even better than the parent strain. Thus, it can be inferred that native ADP-ACS with low expression level was unable to mediate cell growth of Δ6AMP-ACS on acetate. This is the first genetic evidence exhibiting that overexpression of haloarchaeal ADP-ACS catalyzed acetate activation . Collectively, this is a comprehensive study of acetate activation in and the current findings would surely enrich the understanding of acetate metabolism in archaea.
Owing to the high demand and supply challenge of glucose, acetate might be considered a potential alternative carbon source for microbial growth and fermentation. is capable of utilizing acetate as a carbon source for growth and subsequent value-added product synthesis. Thus, it is essential to identify the genes responsible for acetate utilization in . As per available literature, haloarchaeal ADP-forming acetyl-CoA synthetase (APD-ACS) catalyzes the reversible conversion of acetate to acetyl-CoA . However, , acetate activation and acetate formation are catalyzed by AMP-forming acetyl-CoA synthetase (AMP-ACS) and ADP-ACS, respectively. In this study, we have identified six AMP-ACS enzymes that catalyzed acetate activation in i. Deletion of these six genes abolished the growth of the resulting mutant (Δ6AMP-ACS) in acetate medium. The natively expressed ADP-ACS was unable to mediate its acetate activation . Interestingly, an artificial system based on plasmid overexpression of ADP-ACS in Δ6AMP-ACS restored its growth on acetate. This finding suggested that native ADP-ACS was unable to catalyze acetate activation in due to its low expression level. Together, our study explored the acetate activation in and the obtained results would enrich the knowledge of acetate metabolism in archaea. Furthermore, the information offered in this study would benefit the improvement of acetate utilization in haloarchaea for value-added product synthesis.
乙酸盐/乙酰辅酶A的相互转化是一个有趣的代谢节点,在原核生物中主要由一组各种酶催化。嗜盐古菌是一种很有前景的古菌,能够利用乙酸盐作为唯一碳源来生物合成高附加值产品。在此,我们报道了嗜盐古菌中催化乙酸盐活化的关键酶。基于生物信息学和转录分析,筛选出13个可能的候选基因。同时缺失11个基因导致一个突变菌株(命名为Δ11),该菌株无法在乙酸盐上生长。在Δ11中进行基因互补分析表明,6个AMP-ACS(由HFX_0870、HFX_1242、HFX_1451、HFX_6342、HFX_5131和HFX_1643编码)和1个ADP-ACS(由HFX_0998编码)在乙酸盐活化中起作用。此外,嗜盐古菌和嗜盐碱球菌的ADP-ACS基因在Δ11中的异源表达催化了乙酸盐的活化。随后,观察到,在嗜盐古菌中缺失6个AMP-ACS基因会导致所得突变体(Δ6AMP-ACS)在乙酸盐上停止细胞生长。由于ADP-ACS在乙酸盐上表达下调,因此可以排除其在乙酸盐活化中的功能。然而,基于质粒的ADP-ACS过表达使Δ6AMP-ACS能够在乙酸盐上生长,甚至比亲本菌株生长得更好。因此,可以推断,低表达水平的天然ADP-ACS无法介导Δ6AMP-ACS在乙酸盐上的细胞生长。这是第一个遗传证据,表明嗜盐古菌ADP-ACS的过表达催化了乙酸盐的活化。总的来说,这是对嗜盐古菌中乙酸盐活化的全面研究,目前的发现肯定会丰富对古菌中乙酸盐代谢的理解。
由于葡萄糖的高需求和供应挑战,乙酸盐可能被视为微生物生长和发酵的潜在替代碳源。嗜盐古菌能够利用乙酸盐作为碳源进行生长并随后合成高附加值产品。因此,确定嗜盐古菌中负责乙酸盐利用的基因至关重要。根据现有文献,嗜盐古菌形成ADP的乙酰辅酶A合成酶(APD-ACS)催化乙酸盐向乙酰辅酶A的可逆转化。然而,在嗜盐古菌中,乙酸盐的活化和乙酸盐的形成分别由形成AMP的乙酰辅酶A合成酶(AMP-ACS)和ADP-ACS催化。在本研究中,我们确定了6种在嗜盐古菌中催化乙酸盐活化的AMP-ACS酶。缺失这6个基因消除了所得突变体(Δ6AMP-ACS)在乙酸盐培养基中的生长。天然表达的ADP-ACS无法介导其乙酸盐的活化。有趣的是,基于质粒在Δ6AMP-ACS中过表达ADP-ACS的人工系统恢复了其在乙酸盐上的生长。这一发现表明,天然ADP-ACS由于其低表达水平而无法在嗜盐古菌中催化乙酸盐的活化。总之,我们的研究探索了嗜盐古菌中的乙酸盐活化,获得的结果将丰富古菌中乙酸盐代谢的知识。此外,本研究提供的信息将有助于改善嗜盐古菌中乙酸盐的利用以合成高附加值产品。