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基于基因组学的乌拉圭I型登革热病毒I和V基因型的及时检测。

Genomics-based timely detection of dengue virus type I genotypes I and V in Uruguay.

作者信息

Morel Noelia, Giovanetti Marta, Fonseca Vagner, Burgueño Analía, Lima Mauricio, Castro Emerson, Guimarães Natália R, Iani Felipe C M, Bormida Victoria, Cortinas Maria Noel, Ramas Viviana, Coppola Leticia, Bento Ana I, Rosewell Alexander, Franco Leticia, Mendez Rico Jairo, Lourenço José, Junior Alcantara Luiz Carlos, Chiparelli Hector

机构信息

Laboratorio de Virus Emergentes/reemergentes. Unidad de Virología, Departamento de Laboratorios de Salud Pública, Portugal.

Department of Exact and Earth Sciences, University of the State of Bahia, Salvador, Brazil.

出版信息

Heliyon. 2024 Nov 6;10(22):e39246. doi: 10.1016/j.heliyon.2024.e39246. eCollection 2024 Nov 30.

Abstract

This study details a genomics-based approach for the early detection of mosquito-borne pathogens, marked by Uruguay's first ever complete genomic sequencing of Dengue Virus type I genotypes I and V. This pioneering effort has facilitated the prompt identification of these genotypes within the country, enabling Uruguayan public health authorities to develop timely and effective response strategies. Further integrated into this approach is a climate-driven suitability measure, closely associated with Dengue case reports and indicative of the local climate's role in the virus's transmission in the country within the changing climate context. The detection of multiple DENV-1 genotypes co-circulating in Uruguay underscores the necessity for proactive surveillance, particularly at borders, to prevent the introduction and dissemination of novel viral strains within the country and the region. This approach aids in facilitating prompt public health responses and intervention strategies, which are crucial in mitigating the impact of dengue outbreaks.

摘要

本研究详细介绍了一种基于基因组学的方法,用于早期检测蚊媒病原体,其标志是乌拉圭首次对登革热病毒I型基因型I和V进行了完整的基因组测序。这一开创性的工作促进了在该国境内对这些基因型的迅速识别,使乌拉圭公共卫生当局能够制定及时有效的应对策略。该方法还进一步纳入了一项受气候驱动的适宜性指标,该指标与登革热病例报告密切相关,并表明在气候变化背景下当地气候在该国病毒传播中的作用。在乌拉圭检测到多种登革热病毒1型基因型共同传播,凸显了进行主动监测的必要性,特别是在边境地区,以防止新型病毒株在该国和该地区的传入和传播。这种方法有助于促进及时的公共卫生应对和干预策略,这对于减轻登革热疫情的影响至关重要。

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