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苯达莫司汀和美法仑在水中作为抗血癌药物的量子化学研究。

Quantum Chemical Studies of Bendamustine and Melphalan in Water as Antiblood Cancer Agents.

作者信息

Boča Roman, Štofko Juraj, Ladická Miriam, Rajnák Cyril

机构信息

Faculty of Health Science, University of Ss. Cyril and Methodius, 91701 Trnava, Slovakia.

National Cancer Institute, 83310 Bratislava, Slovakia.

出版信息

ACS Omega. 2024 Dec 18;9(52):51453-51462. doi: 10.1021/acsomega.4c08646. eCollection 2024 Dec 31.

DOI:10.1021/acsomega.4c08646
PMID:39758620
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11696757/
Abstract

A hybrid B3LYP version of the Density Functional Theory was applied in full geometry optimization followed by vibrational analysis of mustard-type molecules acting as antiblood cancer agents: melphalan and bendamustine. All calculations were performed with water as a solvent. In addition to the ground-state properties (dipole moment, quadrupole moment, dipole polarizability, solvated surface and volume, zero-point vibration energy, total entropic term), properties that characterize adiabatic redox processes (ionization energy, electron affinity, molecular electronegativity, chemical hardness, electrophilicity index) together with the absolute oxidation and reduction potentials were evaluated. Vibrational frequencies were also calculated, and frontier orbitals were displayed and analyzed. Bendamustine and melphalan in their canonical (amino acid, A) forms were found to have very low ionization energies = 4.85 eV and consequently low (in absolute value) oxidation potentials = -4.92 V based on the reaction Gibbs energies; this indicates considerable antioxidant capacity. The zwitterionic (Z) form of melphalan is more stable in water as opposite the bendamustine, for which the Z-form is less stable in water: Δ = -2.7 and 2.9 kcal mol, respectively. The cationic residues of bendamustine-hydrochloride (bendamustinium) and melphalan-hydrochloride (melphalanium) have properties essentially analogous to those of the canonical forms, except for a very large dipole moment for the Bd-Z, = 29.7 debye. All calculations were refined with the ab initio post-Hartree-Fock method DLPNO-CCSD(T), which is a variant of the "gold standard coupled cluster theory" CCSD(T) that accounts for the major part of the correlation energy (DLPNO-CCSD(T)-Domain Localized Pair Natural Orbitals-Coupled Cluster Singles + Doubles + Triples method). It is confirmed that (i) the canonical form of bendamustine is more stable in water compared to the zwitterionic form by Δ = 4.8 kcal mol; (ii) low ionization energy = 5.10 eV causes low absolute oxidation potential * = -5.10 V and increased antioxidant capacity; and (iii) the redox properties of bendamustinium are analogous to the zwitterionic form of bendamustine and are significantly different from the canonical form of bendamustine. The energy profile of electron-proton coupled transfer shows that the SET-PT mechanism proceeds over lower barriers than the concurrent SPLET mechanism.

摘要

采用密度泛函理论的混合B3LYP版本对作为抗血癌药物的芥子型分子美法仑和苯达莫司汀进行全几何优化及振动分析。所有计算均以水为溶剂进行。除了基态性质(偶极矩、四极矩、偶极极化率、溶剂化表面和体积、零点振动能、总熵项)外,还评估了表征绝热氧化还原过程的性质(电离能、电子亲和能、分子电负性、化学硬度、亲电指数)以及绝对氧化和还原电位。还计算了振动频率,并展示和分析了前沿轨道。发现处于标准(氨基酸,A)形式的苯达莫司汀和美法仑具有非常低的电离能 = 4.85 eV,因此基于反应吉布斯自由能的氧化电位(绝对值)很低 = -4.92 V;这表明其具有相当强的抗氧化能力。与苯达莫司汀相反,美法仑的两性离子(Z)形式在水中更稳定,苯达莫司汀的Z形式在水中稳定性较差:分别为Δ = -2.7和2.9 kcal/mol。盐酸苯达莫司汀(苯达莫司汀鎓)和盐酸美法仑(美法仑鎓)的阳离子残基具有与标准形式基本类似的性质,除了Bd-Z的偶极矩非常大, = 29.7德拜。所有计算都用从头算后哈特里 - 福克方法DLPNO - CCSD(T)进行了优化,它是“金标准耦合簇理论”CCSD(T)的一个变体,考虑了相关能的主要部分(DLPNO - CCSD(T) - 域定域对自然轨道 - 耦合簇单重态 + 双重态 + 三重态方法)。证实了:(i)苯达莫司汀的标准形式在水中比两性离子形式更稳定,Δ = 4.8 kcal/mol;(ii)低电离能 = 5.10 eV导致低的绝对氧化电位 * = -5.10 V并增加了抗氧化能力;(iii)苯达莫司汀鎓的氧化还原性质类似于苯达莫司汀的两性离子形式,且与苯达莫司汀的标准形式有显著差异。电子 - 质子耦合转移的能量分布表明,单电子转移 - 质子转移(SET - PT)机制比同时发生的分步质子转移 - 电子转移(SPLET)机制越过的势垒更低。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/a222111c75bb/ao4c08646_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/c26a904a8d30/ao4c08646_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/4df022b40e15/ao4c08646_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/37ddca55be74/ao4c08646_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/a222111c75bb/ao4c08646_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/c26a904a8d30/ao4c08646_0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/4df022b40e15/ao4c08646_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/37ddca55be74/ao4c08646_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9438/11696757/a222111c75bb/ao4c08646_0004.jpg

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