Guo Baoping, Duan Ying, Cen Hong
Department of Hematology, Guangxi Medical University Cancer Hospital, Nanning, Guangxi, 530021, China.
Heliyon. 2024 Dec 9;10(24):e41007. doi: 10.1016/j.heliyon.2024.e41007. eCollection 2024 Dec 30.
The tumor microenvironment (TME) in lymphoma is influenced by M2 macrophages. This research proposes an novel predictive model that leverages M2 macrophage-associated genes to categorize risk, forecast outcomes, and evaluate the immune profile in patients with newly diagnosed diffuse large B-cell lymphoma (DLBCL) undergoing R-CHOP therapy.
Gene expression data and clinical information from DLBCL patients were retrieved from The Cancer Genome Atlas (TCGA) and Gene Expression Omnibus (GEO) databases. Co-expressed genes linked to M2 macrophage in DLBCL were analyzed using CIBERSORT. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analyses were conducted to explore associated signaling pathways. The M2 macrophage-related gene prognostic model was developed and validated using Cox and LASSO regression. Prognostic signature genes were verified by single-cell RNA-seq analysis.
92 M2 macrophage-related genes were identified based on bulk-seq data. MS4A4A, CCL13, LTB, CCL23, CCL18, XKR4, IL22RA2, and FOLR2 were used to construct the risk model. AUC values for 1-, 3-, and 5-year survival were 0.74, 0.72, and 0.72, respectively. High-risk patients demonstrated elevated immune scores and poorer overall survival. The high-risk subgroup also exhibited greater sensitivity to both chemotherapeutic agents and immune checkpoint inhibitors.
This study presents an accurate and reliable M2 macrophage-related risk model, enhancing understanding of distinct prognostic subsets in DLBCL. It offers potential novel drug options for future treatments.
淋巴瘤中的肿瘤微环境(TME)受M2巨噬细胞影响。本研究提出了一种新型预测模型,该模型利用与M2巨噬细胞相关的基因对新诊断的接受R-CHOP治疗的弥漫性大B细胞淋巴瘤(DLBCL)患者进行风险分类、预测预后并评估免疫特征。
从癌症基因组图谱(TCGA)和基因表达综合数据库(GEO)中检索DLBCL患者的基因表达数据和临床信息。使用CIBERSORT分析与DLBCL中M2巨噬细胞相关的共表达基因。进行基因本体论(GO)和京都基因与基因组百科全书(KEGG)通路分析以探索相关信号通路。使用Cox和LASSO回归开发并验证了M2巨噬细胞相关基因预后模型。通过单细胞RNA测序分析验证预后特征基因。
基于批量测序数据鉴定出92个与M2巨噬细胞相关的基因。使用MS4A4A、CCL13、LTB、CCL23、CCL18、XKR4、IL22RA2和FOLR2构建风险模型。1年、3年和5年生存率的AUC值分别为0.74、0.72和0.72。高危患者显示免疫评分升高且总生存期较差。高危亚组对化疗药物和免疫检查点抑制剂也表现出更高的敏感性。
本研究提出了一种准确可靠且与M2巨噬细胞相关的风险模型,增强了对DLBCL中不同预后亚组的理解。它为未来治疗提供了潜在的新型药物选择。