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评估R2反转录转座子在哺乳动物细胞中活性的实验方案。

Protocol for evaluating the activity of R2 retrotransposons in mammalian cells.

作者信息

Chen Yangcan, Luo Shengqiu, Hu Yanping, Zhou Qi, Li Wei

机构信息

Key Laboratory of Organ Regeneration and Reconstruction, State Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China; Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, Beijing 100101, China; Bejing Institute for Stem Cell and Regenerative Medicine, Beijing 100101, China.

Key Laboratory of Organ Regeneration and Reconstruction, State Key Laboratory of Stem Cell and Reproductive Biology, Institute of Zoology, Chinese Academy of Sciences, Beijing 100101, China; Institute for Stem Cell and Regeneration, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China.

出版信息

STAR Protoc. 2025 Mar 21;6(1):103538. doi: 10.1016/j.xpro.2024.103538. Epub 2025 Jan 6.

DOI:10.1016/j.xpro.2024.103538
PMID:39764849
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11758571/
Abstract

R2 retrotransposons can be harnessed to insert genes at targeted sites by all-RNA delivery, presenting a new technology for next-generation biotherapeutics. Here, we report a protocol for evaluating the gene integration activity of R2 retrotransposons in mammalian cells. We describe the construction of vectors separately expressing R2 protein and donor, the process of liposome transfection, and flow cytometry. This protocol provides a useful reporter system, which can be applied to evaluate the activity of other new retrotransposon systems. For complete details on the use and execution of this protocol, please refer to Chen et al..

摘要

R2逆转座子可通过全RNA递送用于在靶向位点插入基因,为下一代生物疗法提供了一项新技术。在此,我们报告了一种评估R2逆转座子在哺乳动物细胞中基因整合活性的方案。我们描述了分别表达R2蛋白和供体的载体构建、脂质体转染过程以及流式细胞术。该方案提供了一个有用的报告系统,可用于评估其他新型逆转座子系统的活性。有关本方案使用和实施的完整详细信息,请参阅Chen等人的研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/a4dbbc9a9fdc/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/6940f6d360c8/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/2ce60d03157a/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/37b3d2472c4e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/a4dbbc9a9fdc/gr3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/6940f6d360c8/fx1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/2ce60d03157a/gr1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/37b3d2472c4e/gr2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/dfdd/11758571/a4dbbc9a9fdc/gr3.jpg

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引用本文的文献

1
Biology and utilization of R2 retrotransposons.R2反转录转座子的生物学特性与应用
RNA Biol. 2025 Dec;22(1):1-8. doi: 10.1080/15476286.2025.2521890. Epub 2025 Jun 25.

本文引用的文献

1
All-RNA-mediated targeted gene integration in mammalian cells with rationally engineered R2 retrotransposons.利用经过理性设计的 R2 逆转录转座子在哺乳动物细胞中进行全 RNA 介导的靶向基因整合。
Cell. 2024 Aug 22;187(17):4674-4689.e18. doi: 10.1016/j.cell.2024.06.020. Epub 2024 Jul 8.
2
Harnessing eukaryotic retroelement proteins for transgene insertion into human safe-harbor loci.利用真核逆转录元件蛋白将转基因插入人类安全位点。
Nat Biotechnol. 2025 Jan;43(1):42-51. doi: 10.1038/s41587-024-02137-y. Epub 2024 Feb 20.
3
Computer-aided engineering of CRISPR-Cas proteins for enhanced human genome editing.
用于增强人类基因组编辑的CRISPR-Cas蛋白的计算机辅助工程
Sci China Life Sci. 2023 Apr;66(4):883-886. doi: 10.1007/s11427-022-2237-1. Epub 2022 Dec 16.
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Frequency and mechanisms of LINE-1 retrotransposon insertions at CRISPR/Cas9 sites.LINE-1 反转录转座子在 CRISPR/Cas9 位点的插入频率和机制。
Nat Commun. 2022 Jun 27;13(1):3685. doi: 10.1038/s41467-022-31322-3.
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Synergistic engineering of CRISPR-Cas nucleases enables robust mammalian genome editing.CRISPR-Cas核酸酶的协同工程实现了强大的哺乳动物基因组编辑。
Innovation (Camb). 2022 May 26;3(4):100264. doi: 10.1016/j.xinn.2022.100264. eCollection 2022 Jul 12.
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Repbase Update, a database of repetitive elements in eukaryotic genomes.Repbase Update,一个真核生物基因组中重复元件的数据库。
Mob DNA. 2015 Jun 2;6:11. doi: 10.1186/s13100-015-0041-9. eCollection 2015.
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Nucleic Acids Res. 2000 Mar 15;28(6):1418-23. doi: 10.1093/nar/28.6.1418.
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Integration of Bombyx mori R2 sequences into the 28S ribosomal RNA genes of Drosophila melanogaster.家蚕R2序列整合到黑腹果蝇的28S核糖体RNA基因中。
Mol Cell Biol. 2000 Jan;20(1):213-23. doi: 10.1128/MCB.20.1.213-223.2000.