Filonov Vsevolod L, Khomutov Maxim A, Tkachev Yaroslav V, Udod Artem V, Yanvarev Dmitry V, Giovannercole Fabio, Khurs Elena N, Kochetkov Sergei N, De Biase Daniela, Khomutov Alex R
Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Vavilov St., 32, 119991 Moscow, Russia.
Département de Biologie, Université de Namur, Rue de Bruxelles 61, 5000 Namur, Belgium.
Biomolecules. 2024 Dec 10;14(12):1574. doi: 10.3390/biom14121574.
Amino acid analogues with a phosphorus-containing moiety replacing the carboxylic group are promising sources of biologically active compounds. The -phosphinic group, with hydrogen-phosphorus-carbon (H-P-C) bonds and a flattened tetrahedral configuration, is a bioisostere of the carboxylic group. Consequently, amino--phosphinic acids undergo substrate-like enzymatic transformations, leading to new biologically active metabolites. Previous studies employing NMR-based metabolomic and proteomic analyses show that in , α-KG-γ-P (the distal -phosphinic analogue of α-ketoglutarate) can be converted into -Glu-γ-P. Notably, α-KG-γ-P and -Glu-γ-P are antibacterial compounds, but their intracellular targets only partially overlap. -Glu-γ-P is known to be a substrate of aspartate transaminase and glutamate decarboxylase, but its substrate properties with NAD-dependent glutamate dehydrogenase (GDH) have never been investigated. Compounds containing bonds are strong reducing agents; therefore, enzymatic NAD-dependent oxidation is not self-evident. Herein, we demonstrate that -Glu-γ-P is a substrate of eukaryotic GDH and that the pH optimum of -Glu-γ-P NAD-dependent oxidative deamination is shifted to a slightly alkaline pH range compared to -glutamate. By P NMR, we observe that α-KG-γ-P exists in a pH-dependent equilibrium of keto and germinal diol forms. Furthermore, the stereospecific enzymatic synthesis of α-KG-γ-P from -Glu-γ-P using GDH is a possible route for its bio-based synthesis.
用含磷部分取代羧基的氨基酸类似物是具有生物活性化合物的有前景的来源。膦酰基具有氢 - 磷 - 碳(H - P - C)键和扁平的四面体构型,是羧基的生物电子等排体。因此,氨基膦酸会经历类似底物的酶促转化,产生新的生物活性代谢物。先前基于核磁共振的代谢组学和蛋白质组学分析研究表明,在[具体条件未提及]中,α - KG - γ - P(α - 酮戊二酸的远端膦酰类似物)可转化为 - Glu - γ - P。值得注意的是,α - KG - γ - P和 - Glu - γ - P是抗菌化合物,但它们的细胞内靶点仅部分重叠。已知 - Glu - γ - P是天冬氨酸转氨酶和谷氨酸脱羧酶的底物,但其与NAD依赖性谷氨酸脱氢酶(GDH)的底物性质从未被研究过。含有[具体化学键未明确]键的化合物是强还原剂;因此,酶促NAD依赖性氧化并非显而易见。在此,我们证明 - Glu - γ - P是真核生物GDH的底物,并且与谷氨酸相比, - Glu - γ - P的NAD依赖性氧化脱氨的最适pH值向略碱性的pH范围偏移。通过磷核磁共振,我们观察到α - KG - γ - P以酮式和偕二醇形式的pH依赖性平衡存在。此外,使用GDH从 - Glu - γ - P立体定向酶促合成α - KG - γ - P是其基于生物的合成的可能途径。