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安布泊霉素:一种来自放线菌属NF3的新型I类羊毛硫肽。

Embleporicin: A Novel Class I Lanthipeptide from the Actinobacteria sp. NF3.

作者信息

Roblero-Mejía Dora Onely, García-Ausencio Carlos, Rodríguez-Sanoja Romina, Guzmán-Chávez Fernando, Sánchez Sergio

机构信息

Instituto de Investigaciones Biomédicas, Universidad Nacional Autónoma de México (UNAM), Mexico City 04510, Mexico.

Departamento de Alimentos y Biotecnología, Facultad de Química, Universidad Nacional Autónoma de México (UNAM), Mexico City 04510, Mexico.

出版信息

Antibiotics (Basel). 2024 Dec 5;13(12):1179. doi: 10.3390/antibiotics13121179.

Abstract

Genome mining has emerged as a revolutionary tool for discovering new ribosomally synthesized and post-translationally modified peptides (RiPPs) in various genomes. Recently, these approaches have been used to detect and explore unique environments as sources of RiPP-producing microorganisms, particularly focusing on endophytic microorganisms found in medicinal plants. Some endophytic actinobacteria, especially strains of , are notable examples of peptide producers, as specific biosynthetic clusters encode them. To uncover the genetic potential of these organisms, we analyzed the genome of the endophytic actinobacterium sp. NF3 using genome mining and bioinformatics tools. Our analysis led to the identification of a putative class I lanthipeptide. We cloned the core biosynthetic genes of this putative lanthipeptide, named embleporicin, and expressed them in vitro using a cell-free protein system (CFPS). The resulting product demonstrated antimicrobial activity against ATCC 9341. This represents the first RiPP reported in the genus and the first actinobacterial lanthipeptide produced through cell-free technology.

摘要

基因组挖掘已成为一种革命性工具,用于在各种基因组中发现新的核糖体合成及翻译后修饰肽(RiPPs)。最近,这些方法已被用于检测和探索独特环境,作为产生RiPP的微生物来源,尤其关注药用植物中发现的内生微生物。一些内生放线菌,特别是 菌株,是肽生产者的显著例子,因为特定的生物合成簇对它们进行编码。为了揭示这些生物的遗传潜力,我们使用基因组挖掘和生物信息学工具分析了内生放线菌 sp. NF3的基因组。我们的分析导致鉴定出一种推定的I类羊毛硫肽。我们克隆了这种推定的羊毛硫肽(命名为embleporicin)的核心生物合成基因,并使用无细胞蛋白质系统(CFPS)在体外进行表达。所得产物对 ATCC 9341表现出抗菌活性。这代表了在 属中报道的首个RiPP,也是通过无细胞技术产生的首个放线菌羊毛硫肽。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a1f6/11672506/7fb0be22e26b/antibiotics-13-01179-g001.jpg

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