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使用噬菌体vb_Tt72 DNA聚合酶进行精确且准确的DNA 3'/5'末端抛光。

Precise and Accurate DNA-3'/5-Ends Polishing with Phage vb_Tt72 DNA Polymerase.

作者信息

Dorawa Sebastian, Kaczorowski Tadeusz

机构信息

Laboratory of Extremophiles Biology, Department of Microbiology, Faculty of Biology, University of Gdansk, 80-308 Gdansk, Poland.

出版信息

Int J Mol Sci. 2024 Dec 18;25(24):13544. doi: 10.3390/ijms252413544.

Abstract

Tt72 DNA polymerase is a newly characterized PolA-type thermostable enzyme derived from the phage vB_Tt72. The enzyme demonstrates strong 3'→5' exonucleolytic proofreading activity, even in the presence of 1 mM dNTPs. In this study, we examined how the exonucleolytic activity of Tt72 DNA polymerase affects the fidelity of DNA synthesis. Using a plasmid-based gene complementation assay, we determined that the enzyme's mutation frequency was 2.06 × 10, corresponding to an error rate of 1.41 × 10. For the exonuclease-deficient variant, the mutation frequency increased to 6.23 × 10, with an associated error rate of 4.29 × 10. The enzyme retained 3'→5' exonucleolytic activity at temperatures up to 70 °C but lost it after 10 min of incubation at temperatures above 75 °C. Additionally, we demonstrated that Tt72 DNA polymerase efficiently processes 3'/5'-overhangs and removes a single-nucleotide 3'-dA overhang from PCR products at 55 °C. These characteristics make Tt72 DNA polymerase well suited for specialized molecular cloning applications.

摘要

Tt72 DNA聚合酶是一种新鉴定的源自噬菌体vB_Tt72的PolA类型耐热酶。即使在存在1 mM dNTP的情况下,该酶也表现出很强的3'→5'核酸外切酶校对活性。在本研究中,我们研究了Tt72 DNA聚合酶的核酸外切酶活性如何影响DNA合成的保真度。使用基于质粒的基因互补分析,我们确定该酶的突变频率为2.06×10,对应错误率为1.41×10。对于核酸外切酶缺陷变体,突变频率增加到6.23×10,相关错误率为4.29×10。该酶在高达70°C的温度下保留3'→5'核酸外切酶活性,但在高于75°C的温度下孵育10分钟后丧失该活性。此外,我们证明Tt72 DNA聚合酶能有效处理3'/5'-突出端,并在55°C下从PCR产物中去除单核苷酸3'-dA突出端。这些特性使Tt72 DNA聚合酶非常适合特殊的分子克隆应用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f51/11677593/4b2a2bfcbc58/ijms-25-13544-g001.jpg

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