俄罗斯新西伯利亚地区因急性呼吸道感染住院儿童肠道病毒和鼻病毒的遗传多样性与流行病学研究(2023 - 2024年)
Genetic Diversity and Epidemiology of Enteroviruses and Rhinoviruses in Children Hospitalized with Acute Respiratory Infections in Novosibirsk, Russia (2023-2024).
作者信息
Nokhova Alina R, Saroyan Tereza A, Solomatina Mariya V, Gutova Tatyana A, Derko Anastasiya A, Dubovitskiy Nikita A, Murashkina Tatyana A, Sharshov Kirill A, Shestopalov Alexander M, Kurskaya Olga G
机构信息
Federal Research Center of Fundamental and Translational Medicine, Novosibirsk 630060, Russia.
出版信息
Viruses. 2024 Dec 16;16(12):1924. doi: 10.3390/v16121924.
Rhinoviruses and respiratory enteroviruses remain among the leading causes of acute respiratory infections, particularly in children. Little is known about the genetic diversity of enteroviruses and rhinoviruses in pediatric patients with acute respiratory infections in Russia. We assessed the prevalence of human rhinoviruses/enteroviruses (HRV/EV) in 1992 children aged 0 to 17 years hospitalized with acute respiratory infections during the 2023-2024 epidemic season using PCR. The detection rate of HRV/EV was 11% (220/1992). We performed typing of 58 HRV and 28 EV viruses by partial sequencing of the VP1 gene. Rhinovirus A was the most common among HRV, followed by rhinovirus C; rhinovirus B was detected in only three cases. Enteroviruses were represented by all four species, with the EV-D68 genotype being the most frequently detected. Phylogenetic analysis of the VP1 fragment of EV-D68 showed that all our sequences belonged to the B3 subclade. We identified the first case of EV-C105 infection in Russia in a two-year-old girl hospitalized with pneumonia. Phylogenetically, the Novosibirsk strain EV-C105 was closely related to a strain discovered in France in 2018. This research helped to fill a critical gap in understanding the epidemiological landscape of HRV/EV in pediatric populations within Russia.
鼻病毒和呼吸道肠道病毒仍然是急性呼吸道感染的主要病因,尤其是在儿童中。在俄罗斯,对于急性呼吸道感染的儿科患者中肠道病毒和鼻病毒的基因多样性了解甚少。我们使用聚合酶链反应(PCR)评估了2023 - 2024流行季节期间1992名0至17岁因急性呼吸道感染住院的儿童中人类鼻病毒/肠道病毒(HRV/EV)的流行情况。HRV/EV的检出率为11%(220/1992)。我们通过对VP1基因进行部分测序,对58株HRV和28株EV病毒进行了分型。在HRV中,A型鼻病毒最为常见,其次是C型鼻病毒;仅在3例中检测到B型鼻病毒。肠道病毒由所有四个种代表,其中EV - D68基因型检测最为频繁。对EV - D68的VP1片段进行系统发育分析表明,我们所有的序列都属于B3亚分支。我们在一名因肺炎住院的两岁女孩中发现了俄罗斯首例EV - C105感染病例。在系统发育上,新西伯利亚毒株EV - C105与2018年在法国发现的一株毒株密切相关。这项研究有助于填补俄罗斯儿科人群中HRV/EV流行病学情况认识方面的关键空白。