Dubey Khusboo, Behera Raghu Nath
Department of Chemistry, Birla Institute of Technology and Science Pilani - K. K. Birla Goa Campus, Zuarinagar, 403726, Goa, India.
J Mol Model. 2025 Jan 8;31(2):39. doi: 10.1007/s00894-024-06266-8.
There has been growing interest in amino acid ionic liquids because of their low-cost synthesis and superior biodegradability and biocompatibility compared to traditional ionic liquids. In this study, we have investigated the structure and dynamics of three ionic liquids consisting of N-butyl N-methyl piperidinium [Pip] cation with amino acid (lysine [Lys], histidine [His], and arginine [Arg]) anions. The radial distribution functions, the spatial distribution functions, and the coordination numbers have been used to analyze the structure in the bulk phase. The time-correlation functions for hydrogen bonds, ion pairs, and ion cage formation have been calculated to analyze the dynamic properties. The hydrogen bonds found between the ion pairs are mostly electrostatically dominant with moderate to weaker strengths. The [Pip][His] system showed the strongest interaction energy between the ion pairs, while the [Pip][Lys] system demonstrated faster dynamics consistent with its higher diffusion and ion conductivity.
The density functional theory at M06-2X/6-311 + + G(d,p) level was employed for geometry optimization and wave function calculations. The theory of atoms-in-molecule was used for the topological analysis of electron density. The classical molecular dynamics simulations with OPLS-AA force field were employed to study the dynamics of the systems.
由于氨基酸离子液体与传统离子液体相比合成成本低、生物降解性和生物相容性优越,人们对其兴趣与日俱增。在本研究中,我们研究了三种离子液体的结构和动力学,这些离子液体由带有氨基酸(赖氨酸[Lys]、组氨酸[His]和精氨酸[Arg])阴离子的N-丁基-N-甲基哌啶鎓[Pip]阳离子组成。径向分布函数、空间分布函数和配位数已用于分析本体相中的结构。已计算氢键、离子对和离子笼形成的时间相关函数以分析动力学性质。离子对之间发现的氢键大多以静电为主,强度适中至较弱。[Pip][His]体系在离子对之间表现出最强的相互作用能,而[Pip][Lys]体系表现出更快的动力学,与其更高的扩散和离子电导率一致。
采用M06-2X/6-311++G(d,p)水平的密度泛函理论进行几何优化和波函数计算。分子中的原子理论用于电子密度的拓扑分析。采用具有OPLS-AA力场的经典分子动力学模拟来研究体系的动力学。