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一种跨尺度迁移学习框架:从叶片微观结构到宏观高光谱成像预测超氧化物歧化酶活性

A cross-scale transfer learning framework: prediction of SOD activity from leaf microstructure to macroscopic hyperspectral imaging.

作者信息

Hao Jie, Yan Yan, Zhang Yao, Zhang Yiyang, Cao Yune, Wu Longguo

机构信息

School of Wine & Horticulture, Ningxia University, Yinchuan, Ningxia, China.

College of Mechanical and Electronic Engineering, Northwest A&F University, Yangling, Shaanxi, China.

出版信息

Plant Biotechnol J. 2025 Apr;23(4):1091-1100. doi: 10.1111/pbi.14566. Epub 2025 Jan 9.

DOI:10.1111/pbi.14566
PMID:39783132
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11933873/
Abstract

Superoxide dismutase (SOD) plays an important role to respond in the defence against damage when tomato leaves are under different types of adversity stresses. This work employed microhyperspectral imaging (MHSI) and visible near-infrared (Vis-NIR) hyperspectral imaging (HSI) technologies to predict tomato leaf SOD activity. The macroscopic model of SOD activity in tomato leaves was constructed using the convolutional neural network in conjunction with the long and short-term temporal memory (CNN-LSTM) technique. Using heterogeneous two-dimensional correlation spectra (H2D-COS), the sensitive macroscopic and microscopic absorption peaks connected to tomato leaves' SOD activity were made clear. The combination of CNN-LSTM algorithm and H2D-COS analysis was used to research transfer learning between microscopic and macroscopic models based on sensitive wavelengths. The results demonstrated that the CNN-LSTM model, which was based on the FD preprocessed spectra, had the best performance for the microscopic model, with R and R reaching 0.9311 and 0.9075, and RMSEC and RMSEP reaching 0.0109 U/mg and 0.0127 U/mg respectively. There were 10 macroscopic and 10 microscopic significant sensitivity peaks found. The transfer learning was carried out using sensitive wavelengths, and the model performed well with an R value of 0.7549 and an RMSEP of 0.0725 U/mg. The combined CNN algorithm and H2D-COS analysis demonstrated the viability of transfer learning across microscopic and macroscopic models for quantitative tomato leaf SOD prediction.

摘要

超氧化物歧化酶(SOD)在番茄叶片遭受不同类型逆境胁迫时,对响应防御损伤起着重要作用。本研究采用显微高光谱成像(MHSI)和可见近红外(Vis-NIR)高光谱成像(HSI)技术来预测番茄叶片的SOD活性。利用卷积神经网络结合长短时记忆(CNN-LSTM)技术构建了番茄叶片SOD活性的宏观模型。通过异质二维相关光谱(H2D-COS),明确了与番茄叶片SOD活性相关的敏感宏观和微观吸收峰。结合CNN-LSTM算法和H2D-COS分析,基于敏感波长研究微观和宏观模型之间的迁移学习。结果表明,基于FD预处理光谱的CNN-LSTM模型在微观模型中表现最佳,R和R分别达到0.9311和0.9075,RMSEC和RMSEP分别达到0.0109 U/mg和0.0127 U/mg。共发现10个宏观和10个微观显著敏感峰。利用敏感波长进行迁移学习,模型表现良好,R值为0.7549,RMSEP为0.0725 U/mg。结合CNN算法和H2D-COS分析证明了跨微观和宏观模型进行迁移学习以定量预测番茄叶片SOD的可行性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/873d7e97e5f7/PBI-23-1091-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/82d2f7d15c56/PBI-23-1091-g006.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/3027f120b2eb/PBI-23-1091-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/3284360e8063/PBI-23-1091-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/873d7e97e5f7/PBI-23-1091-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/82d2f7d15c56/PBI-23-1091-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/4ed4491ca112/PBI-23-1091-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/24a36bb3979d/PBI-23-1091-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/66e88eddac0d/PBI-23-1091-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/3027f120b2eb/PBI-23-1091-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/3284360e8063/PBI-23-1091-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/8f02/11933873/873d7e97e5f7/PBI-23-1091-g003.jpg

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