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用于生产增值化学品的真养产碱杆菌H16合成生物学工具包和代谢工程的最新进展。

Recent advances in synthetic biology toolkits and metabolic engineering of Ralstonia eutropha H16 for production of value-added chemicals.

作者信息

Wang Ye, Tian Yao, Xu Dake, Cheng Shaoan, Li Wen-Wei, Song Hao

机构信息

State Key Laboratory of Synthetic Biology, and School of Chemical Engineering and Technology, Tianjin University, Tianjin 300072, China.

Shenyang National Laboratory for Materials Science, Northeastern University, 110819 Shenyang, China; Electrobiomaterials Institute, Key Laboratory for Anisotropy and Texture of Materials (Ministry of Education), Northeastern University, 110819 Shenyang, China.

出版信息

Biotechnol Adv. 2025 Mar-Apr;79:108516. doi: 10.1016/j.biotechadv.2025.108516. Epub 2025 Jan 9.

Abstract

Ralstonia eutropha H16, a facultative chemolithoautotrophic Gram-negative bacterium, demonstrates remarkable metabolic flexibility by utilizing either diverse organic substrates or CO as the sole carbon source, with H serving as the electron donor under aerobic conditions. The capacity of carbon and energy metabolism of R. eutropha H16 enabled development of synthetic biology technologies and strategies to engineer its metabolism for biosynthesis of value-added chemicals. This review firstly outlines the development of synthetic biology tools tailored for R. eutropha H16, including construction of expression vectors, regulatory elements, and transformation techniques. The availability of comprehensive omics data (i.e., transcriptomic, proteomic, and metabolomic) combined with the fully annotated genome sequence provides a robust genetic framework for advanced metabolic engineering. These advancements facilitate efficient reprogramming metabolic network of R. eutropha. The potential of R. eutropha as a versatile microbial platform for industrial biotechnology is further underscored by its ability to utilize a wide range of carbon sources for the production of value-added chemicals through both autotrophic and heterotrophic pathways. The integration of state-of-the-art genetic and genomic engineering tools and strategies with high cell-density fermentation processes enables engineered R. eutropha as promising microbial cell factories for optimizing carbon fluxes and expanding the portfolio of bio-based products.

摘要

嗜糖假单胞菌H16是一种兼性化能自养革兰氏阴性菌,通过利用多种有机底物或CO作为唯一碳源,在有氧条件下以H作为电子供体,展现出显著的代谢灵活性。嗜糖假单胞菌H16的碳和能量代谢能力推动了合成生物学技术和策略的发展,以对其代谢进行工程改造,用于增值化学品的生物合成。本综述首先概述了为嗜糖假单胞菌H16量身定制的合成生物学工具的发展,包括表达载体的构建、调控元件和转化技术。全面的组学数据(即转录组学、蛋白质组学和代谢组学)与完全注释的基因组序列相结合,为先进的代谢工程提供了强大的遗传框架。这些进展促进了嗜糖假单胞菌代谢网络的高效重编程。嗜糖假单胞菌作为工业生物技术通用微生物平台的潜力,通过其利用广泛碳源通过自养和异养途径生产增值化学品的能力得到进一步强调。将最先进的遗传和基因组工程工具及策略与高细胞密度发酵过程相结合,使工程化的嗜糖假单胞菌成为优化碳通量和扩大生物基产品组合的有前景的微生物细胞工厂。

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