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评估多基因风险评分对儿童哮喘发病及严重程度的预测作用。

Evaluation of Polygenic Risk Score for Prediction of Childhood Onset and Severity of Asthma.

作者信息

Savelieva Olga, Karunas Alexandra, Prokopenko Inga, Balkhiyarova Zhanna, Gilyazova Irina, Khidiyatova Irina, Khusnutdinova Elza

机构信息

Institute of Biochemistry and Genetics, Subdivision of the Ufa Federal Research Centre of the Russian Academy of Sciences, 450054 Ufa, Russia.

Laboratory of Genomic and Postgenomic Technologies, Federal State Budgetary Educational Institution of Higher Education, Ufa University of Science and Technology, 450076 Ufa, Russia.

出版信息

Int J Mol Sci. 2024 Dec 26;26(1):103. doi: 10.3390/ijms26010103.

Abstract

Asthma is a common complex disease with susceptibility defined through an interplay of genetic and environmental factors. Responsiveness to asthma treatment varies between individuals and is largely determined by genetic variability. The polygenic score (PGS) approach enables an individual risk of asthma and respective response to drug therapy. PGS models could help to predict the individual risk of asthma using 26 SNPs of drug pathway genes involved in the metabolism of glucocorticosteroids (GCS), and beta-2-agonists, antihistamines, and antileukotriene drugs associated with the response to asthma treatment within GWAS were built. For PGS, summary statistics from the Trans-National Asthma Genetic Consortium GWAS meta-analysis, and genotype data for 882 individuals with asthma/controls from the Volga-Ural region, were used. The study group was comprised of Russian, Tatar, Bashkir, and mixed ethnicity individuals with asthma ( = 378) aged 2-18 years. and individuals without features of atopic disease ( = 504) aged 4-67 years from the Volga-Ural region. The DNA samples for the study were collected from 2000 to 2021. The drug pathway genes' PGS revealed a higher odds for childhood asthma risk ( = 2.41 × 10). The receiver operating characteristic (ROC) analysis showed an Area Under the Curve, AUC = 0.63. The AUC of average significance for moderate-to-severe and severe asthma was observed ( = 5.7 × 10, AUC = 0.64). Asthma drug response pathway gene variant PGS models may contribute to the development of modern approaches to optimise asthma diagnostics and treatment.

摘要

哮喘是一种常见的复杂疾病,其易感性通过遗传和环境因素的相互作用来确定。个体对哮喘治疗的反应各不相同,且很大程度上由基因变异性决定。多基因评分(PGS)方法能够评估个体患哮喘的风险以及对药物治疗的相应反应。利用参与糖皮质激素(GCS)代谢的药物途径基因的26个单核苷酸多态性(SNP)构建了PGS模型,这些基因与全基因组关联研究(GWAS)中哮喘治疗反应相关的β-2-激动剂、抗组胺药和抗白三烯药物有关。对于PGS,使用了跨国哮喘遗传联盟GWAS荟萃分析的汇总统计数据,以及来自伏尔加-乌拉尔地区的882名哮喘患者/对照的基因型数据。研究组包括年龄在2至18岁的俄罗斯、鞑靼、巴什基尔和混合族裔的哮喘患者(n = 378),以及来自伏尔加-乌拉尔地区年龄在4至67岁、无特应性疾病特征的个体(n = 504)。研究的DNA样本于2000年至2021年收集。药物途径基因的PGS显示儿童哮喘风险的优势比更高(OR = 2.41×10)。受试者工作特征(ROC)分析显示曲线下面积AUC = 0.63。观察到中度至重度和重度哮喘的平均显著性AUC(OR = 5.7×10,AUC = 0.64)。哮喘药物反应途径基因变异PGS模型可能有助于开发优化哮喘诊断和治疗的现代方法。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/bf26/11719589/c268e7bee9c5/ijms-26-00103-g001.jpg

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