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韩国特有莎草H. Lév. & Vaniot的线粒体基因组。

The mitochondrial genome of H. Lév. & Vaniot, an endemic sedge in Korea.

作者信息

Lee Jieun, Choi Sang Chul, Kim Sangtae

机构信息

Department of Biology, Sungshin Women's University, Seoul, Republic of Korea.

出版信息

Mitochondrial DNA B Resour. 2025 Jan 7;10(1):88-93. doi: 10.1080/23802359.2024.2449090. eCollection 2025.

DOI:10.1080/23802359.2024.2449090
PMID:39802349
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11721983/
Abstract

H. Lév. & Vaniot is an endemic species in Korea and is included in the clade of section in the recent classification system. We present the complete mitochondrial genome sequence of based on the POLAP pipeline with both long- and short-read sequences. The mitochondrial genome is 997,628 bp in length, containing two large regions of 536.94 and 419.04 kbp, respectively, and a pair of direct repeat regions of about 20.25 kbp. The genome contains 57 genes, including 31 protein-coding genes, 20 tRNAs, and 6 rRNAs. Phylogenetic analysis based on mitochondrial proteomes, including those from ten species of related taxa, confirmed a close phylogenetic relationship between and .

摘要

H. Lév. & Vaniot是韩国的特有物种,在最近的分类系统中被归入某一分类单元的进化枝。我们基于POLAP管道,利用长读长和短读长序列,呈现了该物种完整的线粒体基因组序列。线粒体基因组长度为997,628 bp,分别包含两个大小为536.94和419.04 kbp的大区域,以及一对约20.25 kbp的直接重复区域。该基因组包含57个基因,包括31个蛋白质编码基因、20个tRNA和6个rRNA。基于线粒体蛋白质组的系统发育分析,包括来自十个相关分类群物种的蛋白质组,证实了该物种与另一物种之间存在密切的系统发育关系。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/834aabfee5af/TMDN_A_2449090_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/57b376b5c69c/TMDN_A_2449090_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/bb570a67816b/TMDN_A_2449090_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/834aabfee5af/TMDN_A_2449090_F0003_B.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/57b376b5c69c/TMDN_A_2449090_F0001_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/bb570a67816b/TMDN_A_2449090_F0002_C.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ed3e/11721983/834aabfee5af/TMDN_A_2449090_F0003_B.jpg

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