Tsunoda Takeshi, Furumura Shunkichi, Yamazaki Haruka, Maruyama Chitose, Hamano Yoshimitsu, Ogasawara Yasushi, Dairi Tohru
Graduate School of Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, Hokkaido, 060-8628, Japan.
Graduate School of Chemical Sciences and Engineering, Hokkaido University, N13-W8, Kita-ku, Sapporo, Hokkaido, 060-8628, Japan.
Commun Chem. 2025 Jan 13;8(1):9. doi: 10.1038/s42004-025-01406-4.
Lactacystin is an irreversible proteasome inhibitor isolated from Streptomyces lactacystinicus. Despite its importance for its biological activity, the biosynthesis of lactacystin remains unknown. In this study, we identified the lactacystin biosynthetic gene cluster by gene disruption and heterologous expression experiments. We also examined the functions of the genes encoding a PKS/NRPS hybrid protein (LctA), NRPS (LctB), ketosynthase-like cyclase (LctC), cytochrome P450 (LctD), MbtH-like protein (LctE), and formyltransferase (LctF) by in vivo and in vitro experiments. In particular, we demonstrated that LctF directly transferred the formyl group of 10-N-formyl tetrahydrofolate to CoA. The formyl group of formyl-CoA was then transferred to ACP1 by LctA_AT1 to form formyl-ACP1. This is the first example of an AT domain recognizing a formyl group. The formyl group is perhaps transferred to methylmalonate tethered on LctA_ACP2 to yield methylmalonyl-semialdehyde-ACP2. Then, it would be condensed with leucine bound to PCP in LctB by the C domain in LctA. Using a mimic compound, we confirmed that LctC catalyzed the formation of the cyclic α,α-disubstituted amino acid structure with concomitant release of the product from PCP. Thus, we figured out the overall biosynthesis of lactacystin including a novel role of a formyl group in a secondary metabolite.
乳胞素是一种从乳酸囊链霉菌中分离出的不可逆蛋白酶体抑制剂。尽管其生物活性很重要,但其生物合成过程仍不清楚。在本研究中,我们通过基因破坏和异源表达实验鉴定了乳胞素生物合成基因簇。我们还通过体内和体外实验研究了编码聚酮合酶/非核糖体肽合成酶杂合蛋白(LctA)、非核糖体肽合成酶(LctB)、酮合成酶样环化酶(LctC)、细胞色素P450(LctD)、MbtH样蛋白(LctE)和甲酰基转移酶(LctF)的基因的功能。特别是,我们证明LctF直接将10-N-甲酰四氢叶酸的甲酰基转移到辅酶A上。然后,甲酰辅酶A的甲酰基被LctA_AT1转移到ACP1上形成甲酰-ACP1。这是AT结构域识别甲酰基的首个例子。甲酰基可能转移到与LctA_ACP2相连的丙二酸单酰上,生成甲基丙二酰-半醛-ACP2。然后,它会与LctB中与PCP结合的亮氨酸通过LctA中的C结构域缩合。使用模拟化合物,我们证实LctC催化形成环状α,α-二取代氨基酸结构,并伴随产物从PCP上释放。因此,我们弄清楚了乳胞素的整体生物合成过程,包括甲酰基在次级代谢产物中的新作用。