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内在无序蛋白质构象波动中的无标度时空相关性

Scale-free Spatio-temporal Correlations in Conformational Fluctuations of Intrinsically Disordered Proteins.

作者信息

Song Haoyu, Cui Jian, Hu Guorong, Xiong Long, Wutthinitikornkit Yanee, Lei Hai, Li Jingyuan

机构信息

School of Physics, Zhejiang University, Hangzhou, 310058, PR China.

Collaborative Innovation Center of Advanced Microstructures, National Laboratory of Solid State Microstructure, Department of Physics, Nanjing University, Nanjing, 210093, PR China.

出版信息

Adv Sci (Weinh). 2025 Mar;12(9):e2412989. doi: 10.1002/advs.202412989. Epub 2025 Jan 14.

DOI:10.1002/advs.202412989
PMID:39807013
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11884614/
Abstract

The self-assembly of intrinsically disordered proteins (IDPs) into condensed phases and the formation of membrane-less organelles (MLOs) can be considered as the phenomenon of collective behavior. The conformational dynamics of IDPs are essential for their interactions and the formation of a condensed phase. From a physical perspective, collective behavior and the emergence of phase are associated with long-range correlations. Here the conformational dynamics of IDPs and the correlations therein are analyzed, using µs-scale atomistic molecular dynamics (MD) simulations and single-molecule Förster resonance energy transfer (smFRET) experiments. The existence of typical scale-free spatio-temporal correlations in IDP conformational fluctuations is demonstrated. Their conformational evolutions exhibit "1/f noise" power spectra and are accompanied by the appearance of residue domains following a power-law size distribution. Additionally, the motions of residues present scale-free behavioral correlation. These scale-free correlations resemble those in physical systems near critical points, suggesting that IDPs are poised at a critical state. Therefore, IDPs can effectively respond to finite differences in sequence compositions and engender considerable structural heterogeneity which is beneficial for IDP interactions and phase formation.

摘要

内在无序蛋白(IDP)自组装成凝聚相以及无膜细胞器(MLO)的形成可被视为集体行为现象。IDP的构象动力学对于它们的相互作用以及凝聚相的形成至关重要。从物理学角度来看,集体行为和相的出现与长程相关性有关。在此,使用微秒级原子分子动力学(MD)模拟和单分子Förster共振能量转移(smFRET)实验分析了IDP的构象动力学及其相关性。证明了IDP构象波动中存在典型的无标度时空相关性。它们的构象演化呈现出“1/f噪声”功率谱,并伴随着遵循幂律尺寸分布的残基结构域的出现。此外,残基的运动呈现出无标度行为相关性。这些无标度相关性类似于临界点附近物理系统中的相关性,表明IDP处于临界状态。因此,IDP可以有效响应序列组成的有限差异,并产生相当大的结构异质性,这有利于IDP的相互作用和相的形成。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1204/11884614/ff8382ff239d/ADVS-12-2412989-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1204/11884614/8f6abc91e82b/ADVS-12-2412989-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1204/11884614/ff8382ff239d/ADVS-12-2412989-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1204/11884614/8f6abc91e82b/ADVS-12-2412989-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1204/11884614/ff8382ff239d/ADVS-12-2412989-g004.jpg

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本文引用的文献

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Live-Cell Imaging to Resolve Salt-Induced Liquid-Liquid Phase Separation of FUS Protein by Dye Self-Labeling.通过染料自标记进行活细胞成像以解析盐诱导的FUS蛋白液-液相分离
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