Whitman John, Adhikarla Vikram, Tumyan Lusine, Mortimer Joanne, Huang Wei, Rockne Russell, Peterson Joesph R, Cole John
SimBioSys Inc, Chicago, IL.
Division of Mathematical Oncology and Computational Systems Biology, Beckman Research Institute, City of Hope, Duarte, CA.
JCO Clin Cancer Inform. 2025 Jan;9:e2300248. doi: 10.1200/CCI.23.00248. Epub 2025 Jan 14.
Perfusion modeling presents significant opportunities for imaging biomarker development in breast cancer but has historically been held back by the need for data beyond the clinical standard of care (SoC) and uncertainty in the interpretability of results. We aimed to design a perfusion model applicable to breast cancer SoC dynamic contrast-enhanced magnetic resonance imaging (DCE-MRI) series with results stable to low temporal resolution imaging, comparable with published results using full-resolution DCE-MRI, and correlative with orthogonal imaging modalities indicative of biophysical markers.
Subsampled high-temporal-resolution DCE-MRI series were run through our perfusion model and resulting fits were compared for consistency. The fits were also compared against previously published results from institutions using the full resolution series. The model was then evaluated on a separate cohort for validity of biomarker indications. Finally, the model was used as a fundamental part of predicting response to neoadjuvant chemotherapy (NACT).
Temporally subsampled DCE-MRI series yield perfusion fit variations on the scale of 1% of the tumor median value when input frames are varied. Fits generated from pseudoclinical series are within the variation range seen between imaging sites (ρ = 0.55), voxel-wise. The model also demonstrates significant correlations with orthogonal positron emission tomography imaging, indicating potential for use as a biomarker proxy. Specifically, using the perfusion fits as the grounding for a biophysical simulation of response, we correctly predict the pathologic complete response status after NACT in 15 of 18 patients, for an accuracy of 0.83, with a specificity and sensitivity of 0.83 as well.
Clinical DCE-MRI data may be leveraged to provide stable perfusion fit results and indirectly interrogate the tumor microenvironment. These fits can then be used downstream for prediction of response to NACT with high accuracy.
灌注建模为乳腺癌成像生物标志物的开发提供了重要机遇,但以往一直因需要超出临床标准治疗(SoC)的数据以及结果解释的不确定性而受到阻碍。我们旨在设计一种灌注模型,该模型适用于乳腺癌SoC动态对比增强磁共振成像(DCE-MRI)系列,其结果对低时间分辨率成像稳定,与使用全分辨率DCE-MRI发表的结果相当,并且与指示生物物理标志物的正交成像模态相关。
对高时间分辨率DCE-MRI系列进行子采样后,通过我们的灌注模型运行,并比较所得拟合结果的一致性。还将这些拟合结果与先前使用全分辨率系列的机构发表的结果进行比较。然后在一个单独的队列中评估该模型作为生物标志物指示的有效性。最后,将该模型用作预测新辅助化疗(NACT)反应的基本组成部分。
当输入帧数变化时,时间上子采样的DCE-MRI系列产生的灌注拟合变化在肿瘤中位数的1%范围内。伪临床系列生成的拟合在各成像部位之间的变化范围内(体素层面上,ρ = 0.55)。该模型还与正交正电子发射断层扫描成像显示出显著相关性,表明有作为生物标志物替代物的潜力。具体而言,将灌注拟合作为反应生物物理模拟的基础,我们在18例患者中的15例中正确预测了NACT后的病理完全缓解状态,准确率为0.83,特异性和敏感性也均为0.83。
临床DCE-MRI数据可用于提供稳定的灌注拟合结果,并间接探究肿瘤微环境。然后这些拟合结果可在下游用于高精度预测对NACT的反应。