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基于基因组组装和转录组比较的地下害虫东方蝼蛄化学感应基因的表征

Characterization of chemosensory genes in the subterranean pest Gryllotalpa Orientalis based on genome assembly and transcriptome comparison.

作者信息

Chudhary Amna, Guan De-Long, Xu Yandi, Jiang Tao, Yang Lulu, Chen Mengyang, Khan Muhammad Salabat, Zhu Wenhui, Xu Sheng-Quan

机构信息

College of Life Sciences, Shaanxi Normal University, Xi'an, 710062, China.

Guangxi Key Lab Sericulture Ecological & Applications Intelligen, Hechi University, Hechi, China.

出版信息

BMC Genomics. 2025 Jan 14;26(1):33. doi: 10.1186/s12864-025-11217-5.

Abstract

BACKGROUND

Chemosensory perception plays a vital role in insect survival and adaptability, driving essential behaviours such as navigation, mate identification, and food location. This sensory process is governed by diverse gene families, including odorant-binding proteins (OBPs), olfactory receptors (ORs), ionotropic receptors (IRs), chemosensory proteins (CSPs), gustatory receptors (GRs), and sensory neuron membrane proteins (SNMPs). The oriental mole cricket (Gryllotalpa orientalis Burmeister), an invasive pest with an underground, phyllophagous lifestyle, causes substantial crop damage. This study characterizes the chemosensory gene repertoire of G. orientalis based on de novo genome assembly and transcriptomic analysis.

RESULTS

We present a draft genome of G. orientalis at the scaffold level, spanning 2.94 Gb and comprising 10,497 scaffolds. This assembly encodes 19,155 protein-coding genes, including 158 chemosensory genes: 30 odorant receptors (ORs), 64 ionotropic receptors (IRs), ten gustatory receptors (GRs), 28 odorant-binding proteins (OBPs), 25 chemosensory proteins (CSPs), and a single sensory neuron membrane protein (SNMP). Expression analysis indicated that 71 chemosensory genes were actively expressed in the head, thorax, and legs, with ORs and OBPs showing higher expression in the head and legs. In contrast, GRs and IRs were predominantly expressed in the head.

CONCLUSIONS

This study provides the first comprehensive identification of chemosensory gene families in the G. orientalis genome, characterized as a scaffold-level draft genome. These findings provide a basis for future functional studies and highlight the role of chemoreception in the subterranean environment.

摘要

背景

化学感应在昆虫的生存和适应性中起着至关重要的作用,驱动着诸如导航、配偶识别和食物定位等基本行为。这一感觉过程由多种基因家族调控,包括气味结合蛋白(OBP)、嗅觉受体(OR)、离子型受体(IR)、化学感应蛋白(CSP)、味觉受体(GR)和感觉神经元膜蛋白(SNMP)。东方蝼蛄(Gryllotalpa orientalis Burmeister)是一种具有地下食叶生活方式的入侵害虫,会对农作物造成严重损害。本研究基于从头基因组组装和转录组分析,对东方蝼蛄的化学感应基因库进行了表征。

结果

我们展示了东方蝼蛄支架水平的基因组草图,跨度为2.94 Gb,包含10497个支架。该组装编码19155个蛋白质编码基因,其中包括158个化学感应基因:30个气味受体(OR)、64个离子型受体(IR)、10个味觉受体(GR)、28个气味结合蛋白(OBP)、25个化学感应蛋白(CSP)和1个感觉神经元膜蛋白(SNMP)。表达分析表明,71个化学感应基因在头部、胸部和腿部活跃表达,其中OR和OBP在头部和腿部表达较高。相比之下,GR和IR主要在头部表达。

结论

本研究首次全面鉴定了东方蝼蛄基因组中的化学感应基因家族,其基因组特征为支架水平的草图。这些发现为未来的功能研究提供了基础,并突出了化学感受在地下环境中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/c51a/11731388/11cd087232f8/12864_2025_11217_Fig1_HTML.jpg

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