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利用卤代类似物对橙色类胡萝卜素蛋白中酪氨酸-201处的氢键进行工程改造。

Engineering hydrogen bonding at tyrosine-201 in the orange carotenoid protein using halogenated analogues.

作者信息

Tsoraev Georgy V, Bukhanko Antonina Y, Mamchur Aleksandra A, Surkov Makar M, Sidorenko Svetlana V, Moldenhauer Marcus, Tseng Hsueh-Wei, Petrovskaya Lada E, Cherepanov Dmitry A, Shelaev Ivan V, Gostev Fedor E, Blinova Anastasia R, Grigorenko Bella L, Yaroshevich Igor A, Nadtochenko Victor A, Budisa Nediljko, Kamenski Piotr, Friedrich Thomas, Maksimov Eugene G

机构信息

Faculty of Biology, Lomonosov Moscow State University, Moscow, Russia.

Institute of Chemistry PC 14, Technische Universität Berlin, Straße des 17. Juni 135, 10623, Berlin, Germany.

出版信息

Photosynth Res. 2025 Jan 20;163(1):10. doi: 10.1007/s11120-024-01133-2.

DOI:10.1007/s11120-024-01133-2
PMID:39832061
Abstract

The Orange Carotenoid Protein (OCP) is a unique water-soluble photoactive protein that plays a critical role in regulating the balance between light harvesting and photoprotective responses in cyanobacteria. The challenge in understanding OCP´s photoactivation mechanism stems from the heterogeneity of the initial configurations of its embedded ketocarotenoid, which in the dark-adapted state can form up to two hydrogen bonds to critical amino acids in the protein's C-terminal domain, and the extremely low quantum yield of primary photoproduct formation. While a series of experiments involving point mutations within these contacts helped us to identify these challenges, they did not resolve them. To overcome this, we shifted from classical mutagenesis to the translational introduction of non-canonical amino acid residues into the OCP structure. In this work, we demonstrate that replacing a single meta-hydrogen in tyrosine-201 with a halogen atom (chlorine, bromine, or iodine) leads to targeted modifications in the keto-carotenoid-protein matrix interaction network, both in the dark-adapted state and upon photoactivation. We found that such atomic substitutions allow us to effectively weaken key hydrogen bonds without disrupting protein folding, thereby increasing the yield of OCP photoactivation products. Such genetically encoded chemical modification of individual atoms and their systematic in situ variation in complex protein structures establishes a foundation for transforming OCP into a practical tool for optogenetics and other applications.

摘要

橙色类胡萝卜素蛋白(OCP)是一种独特的水溶性光活性蛋白,在调节蓝细菌中光捕获和光保护反应之间的平衡方面起着关键作用。理解OCP光激活机制的挑战源于其嵌入的酮类胡萝卜素初始构型的异质性,在暗适应状态下,它可以与蛋白质C端结构域中的关键氨基酸形成多达两个氢键,以及初级光产物形成的极低量子产率。虽然一系列涉及这些接触点内点突变的实验帮助我们识别了这些挑战,但并未解决它们。为了克服这一问题,我们从经典诱变转向在OCP结构中翻译引入非天然氨基酸残基。在这项工作中,我们证明用卤原子(氯、溴或碘)取代酪氨酸-201中的单个间位氢会导致在暗适应状态和光激活时酮类胡萝卜素-蛋白质基质相互作用网络的靶向修饰。我们发现这种原子取代使我们能够有效削弱关键氢键而不破坏蛋白质折叠,从而提高OCP光激活产物的产率。这种对单个原子的基因编码化学修饰及其在复杂蛋白质结构中的系统原位变化为将OCP转化为光遗传学和其他应用的实用工具奠定了基础。

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Engineering hydrogen bonding at tyrosine-201 in the orange carotenoid protein using halogenated analogues.利用卤代类似物对橙色类胡萝卜素蛋白中酪氨酸-201处的氢键进行工程改造。
Photosynth Res. 2025 Jan 20;163(1):10. doi: 10.1007/s11120-024-01133-2.
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本文引用的文献

1
Structural framework for the understanding spectroscopic and functional signatures of the cyanobacterial Orange Carotenoid Protein families.理解蓝藻类胡萝卜素蛋白家族的光谱和功能特征的结构框架。
Int J Biol Macromol. 2024 Jan;254(Pt 2):127874. doi: 10.1016/j.ijbiomac.2023.127874. Epub 2023 Nov 7.
2
Intrinsic tryptophan fluorescence quenching by iodine in non-canonical amino acid reveals alteration of the hydrogen bond network in the photoactive orange carotenoid protein.非典型氨基酸中碘对色氨酸固有荧光的猝灭作用揭示了光活性橙黄色类胡萝卜素蛋白中氢键网络的改变。
Biochem Biophys Res Commun. 2023 Nov 26;683:149119. doi: 10.1016/j.bbrc.2023.10.051. Epub 2023 Oct 14.
3
Stages of OCP-FRP Interactions in the Regulation of Photoprotection in Cyanobacteria, Part 2: Small-Angle Neutron Scattering with Partial Deuteration.
蓝藻光保护调控中OCP-FRP相互作用的阶段,第2部分:部分氘代的小角中子散射
J Phys Chem B. 2023 Mar 9;127(9):1901-1913. doi: 10.1021/acs.jpcb.2c07182. Epub 2023 Feb 23.
4
Stages of OCP-FRP Interactions in the Regulation of Photoprotection in Cyanobacteria, Part 1: Time-Resolved Spectroscopy.蓝藻光保护调节中OCP-FRP相互作用的阶段,第1部分:时间分辨光谱学
J Phys Chem B. 2023 Mar 9;127(9):1890-1900. doi: 10.1021/acs.jpcb.2c07189. Epub 2023 Feb 17.
5
Parameterization of a single H-bond in Orange Carotenoid Protein by atomic mutation reveals principles of evolutionary design of complex chemical photosystems.通过原子突变对橙色类胡萝卜素蛋白中单个氢键进行参数化揭示了复杂化学光系统进化设计的原理。
Front Mol Biosci. 2023 Jan 26;10:1072606. doi: 10.3389/fmolb.2023.1072606. eCollection 2023.
6
Unifying Perspective of the Ultrafast Photodynamics of Orange Carotenoid Proteins from : Peril of High-Power Excitation, Existence of Different S* States, and Influence of Tagging.来自橙色类胡萝卜素蛋白超快光动力学的统一视角:高功率激发的风险、不同S*态的存在以及标记的影响
JACS Au. 2022 Apr 25;2(5):1084-1095. doi: 10.1021/jacsau.1c00472. eCollection 2022 May 23.
7
Probing the spectral signatures of orange carotenoid protein by orthogonal translation with aromatic non-canonical amino acids.通过与芳香族非标准氨基酸进行正交翻译来探究橙色类胡萝卜素蛋白的光谱特征。
Biochem Biophys Res Commun. 2022 Jun 4;607:96-102. doi: 10.1016/j.bbrc.2022.03.118. Epub 2022 Mar 25.
8
Role of hydrogen bond alternation and charge transfer states in photoactivation of the Orange Carotenoid Protein.氢键交替和电荷转移态在橙黄色类胡萝卜素蛋白光激活中的作用。
Commun Biol. 2021 May 10;4(1):539. doi: 10.1038/s42003-021-02022-3.
9
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Changing Color for Photoprotection: The Orange Carotenoid Protein.变色以防晒:橙色类胡萝卜素结合蛋白。
Trends Plant Sci. 2020 Jan;25(1):92-104. doi: 10.1016/j.tplants.2019.09.013. Epub 2019 Nov 1.