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犬脂肪来源干细胞长期培养与分化过程中凋亡相关基因的差异调控——一项功能生物信息学分析

Differential regulation of apoptosis-related genes during long-term culture and differentiation of canine adipose-derived stem cells - a functional bioinformatical analysis.

作者信息

Jankowski Maurycy, Stefańska Katarzyna, Suchodolski Michał, Dompe Claudia, Wąsiatycz Grzegorz, Kempisty Bartosz, Nowicki Michał, Roszak Magdalena

机构信息

Department of Computer Science and Statistics, Poznan University of Medical Sciences, Poznan, Poland.

Deparment of Histology and Embryology, Poznan University of Medical Sciences, Poznan, Poland.

出版信息

Front Genet. 2025 Jan 6;15:1515778. doi: 10.3389/fgene.2024.1515778. eCollection 2024.

Abstract

INTRODUCTION

Stem cells derived from adipose tissue are gaining popularity in the field of regenerative medicine due to their adaptability and clinical potential. Their rapid growth, ability to differentiate, and easy extraction with minimal complications make adipose-derived stem cells (ADSCs) a promising option for many treatments, particularly those targeting bone-related diseases. This study analyzed gene expression in canine ADSCs subjected to long-term culture and osteogenic differentiation.

METHODS

ADSCs were isolated from discarded surgical waste and cultured for 14 days with and without differentiation media to assess osteogenic changes. RNA sequencing (RNA-seq) and bioinformatical analysis were performed to obtain comprehensive transcriptomic data. A total of 17793 genes were detected and GO enrichment analysis was performed on the differentially expressed genes to identify significantly up- and downregulated Biological Process (BP) GO terms across each comparison.

RESULTS

The upregulation of apoptosis-regulating genes and genes related to circulatory system development suggest an induction of these processes, while the downregulation of neurogenesis and gliogenesis genes points to reciprocal regulation during osteogenic differentiation of canine ADSCs.

DISCUSSION

These findings underscore the potential of ADSCs in bone regeneration and offer valuable insights for advancing tissue engineering, however further studies, including proteomic analyses, are needed to confirm these patterns and their biological significance.

摘要

引言

由于其适应性和临床潜力,源自脂肪组织的干细胞在再生医学领域越来越受欢迎。它们的快速生长、分化能力以及易于提取且并发症极少的特点,使得脂肪来源干细胞(ADSCs)成为许多治疗方法的一个有前景的选择,特别是那些针对骨相关疾病的治疗。本研究分析了长期培养和成骨分化的犬脂肪来源干细胞中的基因表达。

方法

从废弃手术废弃物中分离出脂肪来源干细胞,并在有和没有分化培养基的情况下培养14天,以评估成骨变化。进行RNA测序(RNA-seq)和生物信息学分析以获得全面的转录组数据。共检测到17793个基因,并对差异表达基因进行了GO富集分析,以确定每个比较中显著上调和下调的生物学过程(BP)GO术语。

结果

凋亡调节基因和与循环系统发育相关基因的上调表明这些过程被诱导,而神经发生和神经胶质发生基因的下调表明犬脂肪来源干细胞成骨分化过程中的相互调节。

讨论

这些发现强调了脂肪来源干细胞在骨再生中的潜力,并为推进组织工程提供了有价值的见解,然而需要进一步的研究,包括蛋白质组学分析,以证实这些模式及其生物学意义。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/7995/11743971/566e60516cc2/fgene-15-1515778-g001.jpg

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