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基因组学研究结果支持将奥拉-延森1919年(1980年核准名录)和安德鲁兹与霍德1906年(1980年核准名录)分类为独立的物种。

Genomic insights support the taxonomic differentiation of Orla-Jensen 1919 (Approved Lists 1980) and Andrewes and Horder 1906 (Approved Lists 1980) as individual species.

作者信息

Tang Tengfei, Liu Yiru, Cao Yanhua, Cheng Kun, Lindsay Denise, Bourdichon Francois, Dubois-Lozier Aurélie, Bassett Shalome, Xu Yunmei, Feng Huifen, Song Zhiquan, Liu Rui, Guo Lizheng, Yao Su

机构信息

China National Research Institute of Food & Fermentation Industries, China Center of Industrial Culture Collection, Beijing 100015, PR China.

Fonterra Research and Development Centre, Private Bag 11029, Palmerston North 4442, New Zealand.

出版信息

Int J Syst Evol Microbiol. 2025 Jan;75(1). doi: 10.1099/ijsem.0.006612.

Abstract

is widely used as a starter culture in the production of cheese, yoghurt and various cultured dairy products, which holds considerable significance in both research and practical applications within the food industry. Throughout history, the taxonomy of has undergone several adjustments and revisions. In 1984, based on the result of DNA-DNA hybridization, was reclassified as subsp. . Subsequently, in 1991, Schleifer . proposed the revival of the species also relying on a DNA-DNA hybridization study conducted under stringent conditions. At present, both the taxonomic names, and subsp. , are considered as synonyms and adopted within scientific research, regulatory oversight and relevant industries, leading to a certain degree of confusion. A precise and scientifically accurate taxonomic status is imperative as a foundational prerequisite for a strain evaluation and its application in food manufacture and regulatory contexts. In this study, we utilized whole-genome sequencing to evaluate the genetic relationship of and . At the gene level, phylogenetic analyses were conducted on 52 . strains and 63 . strains based on sequences of both the 16S rRNA gene and the housekeeping gene, . Additionally, a core-gene phylogeny was inferred using the whole-genome sequencing data of 216 strains within the genus. This analysis facilitated an exhaustive evaluation of the evolutionary interconnections among the studied strains. At the genetic level, average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) were used to verify the species identity of and . The results of phylogenetic analysis, ANI and dDDH all collectively confirm that and are distinct species. These research results provide sufficient scientific evidence to support the definitive scientific and rational application of the name of .

摘要

它被广泛用作奶酪、酸奶和各种发酵乳制品生产中的发酵剂,这在食品工业的研究和实际应用中都具有相当重要的意义。纵观历史,它的分类学经历了几次调整和修订。1984年,基于DNA-DNA杂交结果,它被重新分类为亚种。随后,在1991年,施莱费尔……也基于在严格条件下进行的DNA-DNA杂交研究提出恢复该物种。目前,这两个分类学名称,即和亚种,在科学研究、监管监督和相关行业中都被视为同义词并被采用,这导致了一定程度的混乱。精确且科学准确的分类学地位作为菌株评估及其在食品制造和监管环境中应用的基础前提至关重要。在本研究中,我们利用全基因组测序来评估和的遗传关系。在基因水平上,基于16S rRNA基因和看家基因的序列,对52株菌株和63株菌株进行了系统发育分析。此外,利用该属内216株菌株的全基因组测序数据推断了核心基因系统发育。该分析有助于详尽评估所研究菌株之间的进化联系。在遗传水平上,使用平均核苷酸同一性(ANI)和数字DNA-DNA杂交(dDDH)来验证和的物种同一性。系统发育分析、ANI和dDDH的结果都共同证实和是不同的物种。这些研究结果提供了充分的科学证据来支持对名称的明确科学合理应用。

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