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基于网络药理学、分子对接和分子动力学探究当归芍药散治疗肝性脑病的作用机制

Network Pharmacology, Molecular Docking, Molecular Dynamics to Explore the Mechanism of Danggui Shaoyao Powder for Hepatic Encephalopathy.

作者信息

Zhang Miao, Liu Rongxin, Zhao Yusen, Chen Zixin, Zhai Honglin, Si Hongzong

机构信息

School of Basic Medicine, Qingdao University, Qingdao 266071, Shandong, China.

College of Life Sciences, Qingdao University, Qingdao 266071, Shandong, China.

出版信息

Curr Pharm Des. 2025;31(19):1562-1582. doi: 10.2174/0113816128363445241218062155.

Abstract

BACKGROUND

Patients with hepatic encephalopathy (HE) have many triggers and a high mortality rate. The protective effect of existing therapeutic drugs on the liver is weak. We found that Danggui Shaoyao Powder can improve the symptoms of HE and may have a better liver protection effect. And the mechanism of it is unclear.

OBJECTIVE

The research explores the mechanism of Danggui Shaoyao Powder for the treatment of HE through network pharmacology, molecular docking and molecular dynamics.

METHODS

Targets of Danggui Shaoyao Powder were screened from Traditional Chinese Medicine System Pharmacology Platform (TCMSP), SwissTargetPrediction, and Uniport. GeneCards was used to gain targets of HE. Further, core targets and ingredients were screened by protein-protein interaction network (PPI) and herbs-compounds-targets network. Gene Ontology (GO), and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis were completed to screen relative sites and signaling pathways. Molecular docking and dynamics were used to show the stability of ligand-receptor complexes.

RESULTS

IL6, SRC and kaempferol, beta-sitosterol were screened as the top two core targets and ingredients. Dendrites, dendritic trees, and membrane sides were defined as the main sites of action. Core signaling pathways were screened such as: PI3K-Akt and MAPK. Molecular docking shows well-defined binding sites and the stability of the binding is demonstrated by molecular dynamics.

CONCLUSION

Through this study, Danggui Shaoyao Powder may act on IL6, SRC, and other targets through ingredients such as kaempferol and beat-sitosterol and regulate signaling pathways such as PI3K-Akt, MAPK and NF-κB to the treatment of HE.

摘要

背景

肝性脑病(HE)患者有多种诱发因素且死亡率高。现有治疗药物对肝脏的保护作用较弱。我们发现当归芍药散可改善HE症状,且可能具有更好的肝脏保护作用,但其作用机制尚不清楚。

目的

通过网络药理学、分子对接和分子动力学研究当归芍药散治疗HE的作用机制。

方法

从中药系统药理学平台(TCMSP)、SwissTargetPrediction和Uniport筛选当归芍药散的靶点。利用GeneCards获取HE的靶点。进一步通过蛋白质-蛋白质相互作用网络(PPI)和药物-化合物-靶点网络筛选核心靶点和成分。完成基因本体论(GO)和京都基因与基因组百科全书(KEGG)富集分析以筛选相关位点和信号通路。利用分子对接和动力学展示配体-受体复合物的稳定性。

结果

筛选出白细胞介素6(IL6)、原癌基因酪氨酸蛋白激酶(SRC)以及山奈酚、β-谷甾醇作为前两个核心靶点和成分。确定树突、树突树和细胞膜侧为主要作用位点。筛选出核心信号通路如PI3K-Akt和丝裂原活化蛋白激酶(MAPK)。分子对接显示出明确的结合位点,分子动力学证明了结合的稳定性。

结论

通过本研究,当归芍药散可能通过山奈酚和β-谷甾醇等成分作用于IL6、SRC等靶点,并调节PI3K-Akt、MAPK和核因子κB(NF-κB)等信号通路来治疗HE。

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