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用于固态核磁共振灵敏度增强的TOCSY混合评估以及4D实验在全长30 kDa膜蛋白GlpG侧链归属中的应用。

Evaluation of TOCSY mixing for sensitivity-enhancement in solid-state NMR and application of 4D experiments for side-chain assignments of the full-length 30 kDa membrane protein GlpG.

作者信息

Öster Carl, Chevelkov Veniamin, Lange Adam

机构信息

Research Unit Molecular Biophysics, Leibniz-Forschungsinstitut für Molekulare Pharmakologie, Robert- Rössle-Straße 10, 13125, Berlin, Germany.

Institut für Biologie, Humboldt-Universität zu Berlin, Invalidenstraße 42, 10115, Berlin, Germany.

出版信息

J Biomol NMR. 2025 Mar;79(1):25-34. doi: 10.1007/s10858-024-00454-7. Epub 2025 Jan 22.

DOI:10.1007/s10858-024-00454-7
PMID:39841396
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11832555/
Abstract

Chemical shift assignments of large membrane proteins by solid-state NMR experiments are challenging. Recent advancements in sensitivity-enhanced pulse sequences, have made it feasible to acquire H-detected 4D spectra of these challenging protein samples within reasonable timeframes. However, obtaining unambiguous assignments remains difficult without access to side-chain chemical shifts. Drawing inspiration from sensitivity-enhanced TOCSY experiments in solution NMR, we have explored the potential of C- C TOCSY mixing as a viable option for triple sensitivity-enhanced 4D experiments aimed at side-chain assignments in solid-state NMR. Through simulations and experimental trials, we have identified optimal conditions to achieve uniform transfer efficiency for both transverse components and to minimize undesired cross-transfers. Our experiments, conducted on the 30 kDa membrane protein GlpG embedded in E. coli liposomes, have demonstrated enhanced sensitivity compared to the most effective dipolar and J-coupling-based C- C mixing sequences. Notably, a non-uniformly sampled 4D hCXCANH spectrum with exceptionally high sensitivity was obtained in just a few days using a 600 MHz spectrometer equipped with a 1.3 mm probe operating at a magic angle spinning rate of 55 kHz.

摘要

通过固态核磁共振实验对大型膜蛋白进行化学位移归属具有挑战性。灵敏度增强脉冲序列的最新进展使得在合理的时间范围内获取这些具有挑战性的蛋白质样品的氢检测4维谱成为可能。然而,如果无法获得侧链化学位移,获得明确的归属仍然很困难。借鉴溶液核磁共振中灵敏度增强的全相关谱(TOCSY)实验,我们探索了碳-碳全相关谱混合作为三重灵敏度增强4维实验的可行选择的潜力,该实验旨在进行固态核磁共振中的侧链归属。通过模拟和实验试验,我们确定了实现横向分量均匀转移效率并最小化不期望的交叉转移的最佳条件。我们在嵌入大肠杆菌脂质体的30 kDa膜蛋白GlpG上进行的实验表明,与最有效的基于偶极和J耦合的碳-碳混合序列相比,灵敏度有所提高。值得注意的是,使用配备1.3 mm探头、以55 kHz魔角旋转速率运行的600 MHz光谱仪,仅在几天内就获得了具有极高灵敏度的非均匀采样4维hCXCANH谱。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/ccc05be5a169/10858_2024_454_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/648809b9c007/10858_2024_454_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/656a948fa8f0/10858_2024_454_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/ccc05be5a169/10858_2024_454_Fig3_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/648809b9c007/10858_2024_454_Fig1_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/656a948fa8f0/10858_2024_454_Fig2_HTML.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a75d/11832555/ccc05be5a169/10858_2024_454_Fig3_HTML.jpg

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