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用于检测的分子诊断分析方法的最新进展:一项系统综述

Current Updates on Molecular Diagnostic Assays Used for Detection of : A Systematic Review.

作者信息

Wong River Chun-Wai, Lee Alfred Lok-Hang, Cheung Ingrid Yu-Ying, Chow Viola Chi-Ying, Ip Margaret, Lai Christopher Koon-Chi

机构信息

Department of Microbiology, Prince of Wales Hospital, Hospital Authority, Hong Kong SAR, China.

Department of Microbiology, Faculty of Medicine, The Chinese University of Hong Kong, Hong Kong SAR, China.

出版信息

Diagnostics (Basel). 2025 Jan 9;15(2):140. doi: 10.3390/diagnostics15020140.

Abstract

: is an emerging multidrug-resistant pathogen with the potential to cause invasive fungal infections and healthcare-associated outbreaks. Currently, there is no systematic review explicitly focusing on the up-to-date molecular diagnostics of this pathogen to cover the entire process, including sample pre-extraction procedures, nucleic acid extraction, and DNA-based detection. Sample pre-treatment and extraction are the prerequisites before molecular testing and have implications on the downstream detection but have not been reviewed elsewhere. This review aims to summarize a comprehensive update in the past 5 years. : A systematic review was conducted to search for articles published in the period between 1 January 2020 and 20 November 2024 from various databases, including PubMed, Google Scholar, and Web of Science. The findings were produced through narrative synthesis, with quantitative analysis conducted where applicable. : Starting from 1115 records, 28 studies that met the inclusion criteria were included in the analysis. This review summarized the key updates on three categories, including (i) sample pre-extraction procedures and nucleic acid extraction, including magnetic, bead-beating, mechanical, chemical, thermal, and column-based protocols; (ii) commercial molecular assays; and (iii) laboratory-developed tests (LDTs). For real-time PCR, commercial molecular assays and LDTs showed sensitivity (ranging from 94.9% to 100% and 44% to 100%, respectively) and specificity (ranging from 98.2% to 100% and 92% to 100%, respectively). : Here, we describe a useful summary to enlighten readers from clinical microbiology laboratories on the nucleic acid extraction protocols and performance of various molecular diagnostic assays used for the detection of .

摘要

是一种新兴的多重耐药病原体,有可能导致侵袭性真菌感染和医疗相关的疫情爆发。目前,尚无明确聚焦于该病原体最新分子诊断方法以涵盖整个过程(包括样本提取前程序、核酸提取和基于DNA的检测)的系统综述。样本预处理和提取是分子检测前的先决条件,对下游检测有影响,但在其他地方尚未得到综述。本综述旨在总结过去5年的全面更新情况。:进行了一项系统综述,以搜索2020年1月1日至2024年11月20日期间在包括PubMed、谷歌学术和科学网在内的各种数据库中发表的文章。研究结果通过叙述性综合得出,在适用的情况下进行定量分析。:从1115条记录开始,分析纳入了28项符合纳入标准的研究。本综述总结了三个类别的关键更新内容,包括(i)样本提取前程序和核酸提取,包括基于磁性、珠磨、机械、化学、热和柱的方案;(ii)商业分子检测;以及(iii)实验室自行开发的检测方法(LDTs)。对于实时PCR,商业分子检测和LDTs的敏感性(分别为94.9%至100%和44%至100%)和特异性(分别为98.2%至100%和92%至100%)。:在此,我们描述了一个有用的总结,以启发临床微生物学实验室的读者了解用于检测的核酸提取方案和各种分子诊断检测的性能。

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