Huang Rui, Zhang Xiaoni, Luo Kaiqing, Tembrock Luke R, Li Sen, Wu Zhiqiang
College of Horticulture, Shanxi Agricultural University, Jinzhong 030801, China.
Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen 518120, China.
Genes (Basel). 2025 Jan 1;16(1):41. doi: 10.3390/genes16010041.
() are important in plant growth and development, especially flower development. However, there is limited research on the comprehensive identification and characterization of genes in roses. We employed bioinformatics tools to identify the genes of roses. These genes were characterized for their phylogenetic relationships, chromosomal positions, conserved motifs, gene structures, and expression patterns. In this study, a total of 17 genes were identified in the genomes of 'OB', 'CH', , and . Based on RNA-seq analyses, we found that the genes had diverse transcript patterns in various tissues and cultivars. In 'CH', the expression levels of during different flower-development stages were classified into four clusters. In cluster 3 and cluster 4, were specifically high and low in different stages of floral evocation. Gene expression and phylogenetic analyses showed that , , and were likely to be the key genes for rose flower development. Conclusions: The identification and characterization of genes in were investigated. The results presented here provide a theoretical basis for the molecular mechanisms of genes in plant development and flowering for roses, with a broader application for other species in the rose family and for the development of novel cultivars.
()在植物生长发育尤其是花发育中很重要。然而,关于玫瑰中基因的综合鉴定和表征的研究有限。我们利用生物信息学工具来鉴定玫瑰的基因。对这些基因的系统发育关系、染色体位置、保守基序、基因结构和表达模式进行了表征。在本研究中,在“OB”、“CH”、 和 的基因组中总共鉴定出17个基因。基于RNA测序分析,我们发现这些基因在各种组织和品种中具有不同的转录模式。在“CH”中,不同花发育阶段的表达水平被分为四类。在第3类和第4类中,在成花诱导的不同阶段分别特别高和低。基因表达和系统发育分析表明, 、 和 可能是玫瑰花朵发育的关键基因。结论:对玫瑰中基因进行了鉴定和表征。此处给出的结果为玫瑰中基因在植物发育和开花中的分子机制提供了理论基础,在蔷薇科其他物种中有更广泛的应用,并为新品种的培育提供了依据。