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球状蛋白质折叠与稳定性的理论

Theory for the folding and stability of globular proteins.

作者信息

Dill K A

出版信息

Biochemistry. 1985 Mar 12;24(6):1501-9. doi: 10.1021/bi00327a032.

Abstract

Using lattice statistical mechanics, we develop theory to account for the folding of a heteropolymer molecule such as a protein to the globular and soluble state. Folding is assumed to be driven by the association of solvophobic monomers to avoid solvent and opposed by the chain configurational entropy. Theory predicts a phase transition as a function of temperature or solvent character. Molecules that are too short or too long or that have too few solvophobic residues are predicted not to fold. Globular molecules should have a largely solvophobic core, but there is an entropic tendency for some residues to be "out of place", particularly in small molecules. For long chains, molecules comprised of globular domains are predicted to be thermodynamically more stable than spherical molecules. The number of accessible conformations in the globular state is calculated to be an exceedingly small fraction of the number available to the random coil. Previous estimates of this number, which have motivated kinetic theories of folding, err by many tens of orders of magnitude.

摘要

利用晶格统计力学,我们发展了一套理论来解释诸如蛋白质之类的杂聚物分子折叠成球状可溶状态的过程。假设折叠是由疏溶剂单体的缔合驱动的,以避免与溶剂接触,同时受到链构象熵的阻碍。理论预测这是一个随温度或溶剂性质变化的相变过程。预测太短、太长或疏溶剂残基太少的分子不会折叠。球状分子应该有一个主要由疏溶剂组成的核心,但由于熵的作用,一些残基有“错位”的趋势,在小分子中尤其如此。对于长链分子,由球状结构域组成的分子预计比球形分子在热力学上更稳定。计算得出球状状态下可及构象的数量只是无规卷曲状态下可及构象数量的极小一部分。此前对这个数量的估计推动了折叠动力学理论的发展,但误差达数十个数量级。

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