Suppr超能文献

翡翠贻贝的从头转录组组装:一种用于生态毒理学研究的新型无脊椎动物模型。

De novo transcriptome assembly of the Perna viridis: A novel invertebrate model for ecotoxicological studies.

作者信息

Vysakh V G, Sukumaran Sandhya, A Gopalakrishnan

机构信息

Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO., Kochi, 682018, Kerala, India.

Mangalore University, Mangalagangotri, Mangalore, 574199, Karnataka, India.

出版信息

Sci Data. 2025 Jan 25;12(1):147. doi: 10.1038/s41597-025-04496-w.

Abstract

Mussels, particularly Perna viridis, are vital sentinel species for toxicology and biomonitoring in environmental health. This species plays a crucial role in aquaculture and significantly impacts the fisheries sector. Despite the ecological and economic importance of this species, its omics resources are still scarce. We generated a gill-specific reference transcriptome for Perna viridis using 292 million short Illumina reads from eight pooled gill tissue samples isolated from twenty-four individuals. The Trinity assembler generated 438,842 transcripts with an N50 of 1,958 bp. Several databases were employed in the annotation process. This dataset greatly expands the omics resources of bivalve databases and advances our knowledge of transcriptomics, molecular biology, environmental toxicology, and cancer research.

摘要

贻贝,尤其是翡翠贻贝,是环境卫生毒理学和生物监测的重要指示物种。该物种在水产养殖中发挥着关键作用,并对渔业部门产生重大影响。尽管该物种具有生态和经济重要性,但其组学资源仍然稀缺。我们使用从24个个体分离的8个混合鳃组织样本中的2.92亿条Illumina短读长序列,生成了翡翠贻贝鳃特异性参考转录组。Trinity组装器生成了438,842个转录本,N50为1,958 bp。在注释过程中使用了多个数据库。该数据集极大地扩展了双壳贝类数据库的组学资源,并推进了我们对转录组学、分子生物学、环境毒理学和癌症研究的认识。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ba4d/11763249/7ee343a6a11b/41597_2025_4496_Fig1_HTML.jpg

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验