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条纹肌蛤的转录组印记:一种主要入侵物种的从头转录组组装

The transcriptomic footprint of Mytella strigata: de novo transcriptome assembly of a major invasive species.

作者信息

Vysakh V G, Sukumaran Sandhya, Sebastian Wilson, Gopalakrishnan A

机构信息

Marine Biotechnology Fish Nutrition and Health Division, Central Marine Fisheries Research Institute, Post Box No 1603 Ernakulam North PO., Kochi, 682018, Kerala, India.

Mangalore University. Mangalagangotri, Mangalore, 574199, Karnataka, India.

出版信息

Sci Data. 2025 Feb 3;12(1):201. doi: 10.1038/s41597-025-04559-y.

Abstract

Mytella strigata, a potentially invasive species native to South America, is rapidly spreading across various aquatic ecosystems around the globe, posing a threat to native mussels. This study presents the first comprehensive de novo transcriptome assembly of M. strigata. We generated 254 million reads, which were processed and assembled using the Trinity assembler, resulting in 60362 transcripts with an N50 of 1,578 bp and over 93-98% completeness, as confirmed by BUSCO analysis with multiple ortho-datasets. A number of databases were used for functional annotation, including UniProt, KEGG, Reactome, InterPro, and eggNOG. Gene Ontology and pathway analyses identified transcripts associated with key biological processes, including those associated with cell signalling, metabolism, stress responses, cancer pathways, and immune regulation. This dataset enriches the bivalve database by advancing the understanding of the adaptive success and evolutionary resilience of this invasive species. The present study provides a fundamental framework for future research on the ecological and evolutionary impacts of this invasive species.

摘要

条纹贻贝(Mytella strigata)是一种原产于南美洲的潜在入侵物种,正在全球各种水生生态系统中迅速扩散,对本地贻贝构成威胁。本研究首次对条纹贻贝进行了全面的从头转录组组装。我们生成了2.54亿条读数,使用Trinity组装器进行处理和组装,得到了60362条转录本,N50为1578 bp,通过使用多个直系数据集的BUSCO分析证实,完整性超过93%-98%。使用了多个数据库进行功能注释,包括UniProt、KEGG、Reactome、InterPro和eggNOG。基因本体论和通路分析确定了与关键生物学过程相关的转录本,包括与细胞信号传导、代谢、应激反应、癌症通路和免疫调节相关的转录本。该数据集通过增进对这种入侵物种的适应性成功和进化弹性的理解,丰富了双壳贝类数据库。本研究为今后关于这种入侵物种的生态和进化影响的研究提供了一个基本框架。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1218/11790854/23e17d751141/41597_2025_4559_Fig1_HTML.jpg

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