Li Ganggang, Zhang Yuwei, Jiang Huanyu, Wu Xuanyu, Hao Yanwei, Su Yuchen, Zou Yutong, Xian Wenjia, Wang Fei, Du Quanyu
Department of Geriatrics, Hospital of Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 610072, China.
School of Basic Medical Sciences, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, 611130, China.
Heliyon. 2025 Jan 2;11(1):e41628. doi: 10.1016/j.heliyon.2025.e41628. eCollection 2025 Jan 15.
Idiopathic pulmonary fibrosis (IPF) is a chronic and progressive interstitial lung disease. It is characterized by inflammation and fibrosis in the lung parenchyma and interstitium. Given its poor prognosis and limited treatment options, understanding the underlying molecular mechanisms is crucial. Recent evidence suggests that lipid metabolism plays a pivotal role in IPF pathogenesis, however, the precise mechanisms remain poorly understood. To address this, we analyzed 12 bulk RNA-seq and 2 single-cell RNA-seq datasets from the GEO database using machine learning approaches. As a result, we identified four key lipid-related genes-PPARG, SPP1, CASP3, and PECAM1-that are expressed across various cell types. Specifically, in alveolar macrophages (AMs), we observed that PPARG was significantly downregulated, while SPP1 was highly expressed. Importantly, PPARG serves as a transcriptional regulator of SPP1, which in turn mediates intercellular signaling via CD44. Based on these findings, we propose a novel PPARG/SPP1/CD44 signaling pathway in AMs, which modulates lipid metabolism and likely contributes to the progression of fibrosis in IPF. Moreover, network pharmacology analysis identified several herbal compounds that target PPARG, offering potential therapeutic opportunities. In conclusion, these findings highlight the critical role of lipid metabolism in IPF and present novel molecular targets for the development of future therapeutic strategies.
特发性肺纤维化(IPF)是一种慢性进行性间质性肺疾病。其特征在于肺实质和间质的炎症和纤维化。鉴于其预后不良且治疗选择有限,了解潜在的分子机制至关重要。最近的证据表明,脂质代谢在IPF发病机制中起关键作用,然而,确切机制仍知之甚少。为了解决这个问题,我们使用机器学习方法分析了来自GEO数据库的12个批量RNA测序和2个单细胞RNA测序数据集。结果,我们鉴定了四个关键的脂质相关基因——PPARG、SPP1、CASP3和PECAM1——它们在各种细胞类型中表达。具体而言,在肺泡巨噬细胞(AMs)中,我们观察到PPARG显著下调,而SPP1高度表达。重要的是,PPARG作为SPP1的转录调节因子,而SPP1又通过CD44介导细胞间信号传导。基于这些发现,我们提出了AMs中的一种新型PPARG/SPP1/CD44信号通路,该通路调节脂质代谢并可能促进IPF中的纤维化进展。此外,网络药理学分析确定了几种靶向PPARG的草药化合物,提供了潜在的治疗机会。总之,这些发现突出了脂质代谢在IPF中的关键作用,并为未来治疗策略的开发提供了新的分子靶点。