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微量元素可提高微生物生长的可重复性。

Trace elements increase replicability of microbial growth.

作者信息

Shimoga Nadig Amit, Gross Rotem, Bollenbach Tobias, Ansmann Gerrit

机构信息

Institute for Biological Physics, University of Cologne, Zülpicher Straße 77, Köln 50937, Germany.

Center for Data and Simulation Science, University of Cologne, Köln 50931, Germany.

出版信息

Open Biol. 2025 Jan;15(1):240301. doi: 10.1098/rsob.240301. Epub 2025 Jan 29.

Abstract

Trace elements are often omitted from chemically defined growth media. From established properties of trace elements, we deduce that this omission makes experiments unnecessarily sensitive to unavoidable contamination with trace elements. We confirm this experimentally by growing 11 bacterial strains in high replicate with and without supplementing trace elements, keeping all other conditions as fixed as possible to isolate the effect of trace elements. We find that supplementing trace elements considerably reduces variability of growth even in this benign scenario, and we argue that typical experimental set-ups exacerbate this. We discuss implications for the design and use of trace-element supplements and in particular argue that their use should be standard practice, as they can reduce variability of almost all experiments using chemically defined media, taking a step towards greater precision and replicability in microbiology.

摘要

在化学成分明确的生长培养基中,微量元素常常被省略。根据微量元素已确定的特性,我们推断这种省略会使实验对不可避免的微量元素污染不必要地敏感。我们通过在有和没有补充微量元素的情况下高重复地培养11种细菌菌株进行实验验证,尽可能保持所有其他条件不变以分离出微量元素的影响。我们发现,即使在这种良性情况下,补充微量元素也能显著降低生长的变异性,并且我们认为典型的实验设置会加剧这种情况。我们讨论了微量元素补充剂的设计和使用的影响,特别是认为它们的使用应该成为标准做法,因为它们可以降低几乎所有使用化学成分明确的培养基的实验的变异性,朝着提高微生物学实验的精度和可重复性迈出一步。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ef2e/11774585/4f45c6c7e7fd/rsob.240301.fg001.jpg

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