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一株四氯化碳降解菌Stari2的全基因组序列

Complete genome sequence of a carbon tetrachloride-degrading bacterium, sp. strain Stari2.

作者信息

Stari Leonardo, Jittayasotorn Thiti, Inoue Chihiro, Chien Mei-Fang

机构信息

Graduate School of Environmental Studies, Tohoku University, Sendai, Japan.

Graduate School of Life Science, Tohoku University, Sendai, Japan.

出版信息

Microbiol Resour Announc. 2025 Mar 11;14(3):e0095824. doi: 10.1128/mra.00958-24. Epub 2025 Jan 29.

DOI:10.1128/mra.00958-24
PMID:39878464
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC11895450/
Abstract

This article reports on the complete genome of sp. strain Stari2, which was shown to have the ability to degrade carbon tetrachloride (CCl) in aerobic conditions. A single circular sequence of 6,310,573 bp, a GC content of 60.3%, and 5,680 coding sequences were obtained. analysis revealed an average nucleotide identity of 94.06% to its closest species.

摘要

本文报道了sp. 菌株Stari2的全基因组,该菌株在有氧条件下具有降解四氯化碳(CCl)的能力。获得了一个长度为6,310,573 bp的单一环状序列,GC含量为60.3%,以及5,680个编码序列。分析显示,它与其最接近的物种的平均核苷酸同一性为94.06%。

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2
eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale.eggNOG-mapper v2:宏基因组尺度的功能注释、直系同源物分配和结构域预测。
Mol Biol Evol. 2021 Dec 9;38(12):5825-5829. doi: 10.1093/molbev/msab293.
3
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Nucleic Acids Res. 2021 Jan 8;49(D1):D1020-D1028. doi: 10.1093/nar/gkaa1105.
4
KofamKOALA: KEGG Ortholog assignment based on profile HMM and adaptive score threshold.KOFA-MKOALA:基于轮廓 HMM 和自适应得分阈值的 KEGG 直系同源物分配。
Bioinformatics. 2020 Apr 1;36(7):2251-2252. doi: 10.1093/bioinformatics/btz859.
5
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6
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7
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9
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