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植物促生真菌及生物防治剂TM10菌株的全基因组序列数据

Whole genome sequence data of strain TM10, a plant growth-promoting fungus and biocontrol agent.

作者信息

Prismantoro Dedat, Chua Kah-Ooi, Teo Kelly Wan-Ee, Chan Rosamond, Jefferson Thomas Argyarich, Suhaimi Nurul Shamsinah Mohd, Mispan Muhamad Shakirin, Miranti Mia, Doni Febri

机构信息

Department of Biology, Faculty of Mathematics and Natural Sciences, Universitas Padjadjaran, Jatinangor 45363, West Java, Indonesia.

Centre for Research in Biotechnology for Agriculture (CEBAR), Universiti Malaya, Kuala Lumpur 50603, Malaysia.

出版信息

Data Brief. 2025 Jan 9;58:111283. doi: 10.1016/j.dib.2025.111283. eCollection 2025 Feb.

Abstract

strain TM10 was isolated from rhizosphere soil of rice plants cultivated under system of rice intensification (SRI) practises in West Java, Indonesia. It exhibits significant potential as a plant growth promoter and biocontrol agent in rice plants. Although this strain has shown promise in promoting plant growth and suppressing phytopathogens under and conditions, there is still a lack of genomic data to elucidate the molecular mechanisms underlying its plant growth-promoting and biocontrol capabilities. This study reports the whole genome sequence of strain TM10. The genome of the fungus was sequenced using the MGI DNBSEQ-G400 high-throughput sequencing platform. The assembled genome of strain TM10 was approximately 36 Mbp in length, comprising 385 contigs with a GC content of 48 % and a sequencing coverage of 43.8×. This genomic data provides a foundation for harnessing the plant growth-promoting and biocontrol potential of this strain. The complete genome sequence has been deposited at the National Center for Biotechnology Information (NCBI) under Bioproject accession number PRJNA1181959, BioSample ID SAMN44575400, and genome accession number JBIYZQ000000000. These data are valuable for further research into the biotechnological potential of this strain and for exploring the molecular mechanisms underlying its plant growth-promoting and biocontrol activities.

摘要

菌株TM10是从印度尼西亚西爪哇采用强化栽培体系(SRI)种植的水稻根际土壤中分离得到的。它在水稻植株中展现出作为植物生长促进剂和生物防治剂的巨大潜力。尽管该菌株在不同条件下已显示出促进植物生长和抑制植物病原体的前景,但仍缺乏基因组数据来阐明其促进植物生长和生物防治能力背后的分子机制。本研究报告了菌株TM10的全基因组序列。该真菌的基因组使用MGI DNBSEQ - G400高通量测序平台进行测序。菌株TM10组装后的基因组长度约为36 Mbp,由385个重叠群组成,GC含量为48%,测序覆盖度为43.8×。这些基因组数据为利用该菌株的植物生长促进和生物防治潜力奠定了基础。完整的基因组序列已保存在美国国立生物技术信息中心(NCBI),生物项目登录号为PRJNA1181959,生物样本ID为SAMN44575400,基因组登录号为JBIYZQ000000000。这些数据对于进一步研究该菌株的生物技术潜力以及探索其促进植物生长和生物防治活性背后的分子机制具有重要价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/9cd5/11783055/23e9a751557d/gr1.jpg

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