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从植物药到传统药物研究,寻找抗猴痘病毒的新药分子;分子对接、虚拟筛选和药物代谢及药物动力学分析。

From phytomedicine to conventional drug research, to look for new drug molecule against monkey pox virus; a molecular docking, virtual screening and ADME analysis.

作者信息

Goswami Pritam, Fakola Emmanuel Gabriel, Ghosh Sayak, Ghosh Shubhamoy, Das Satadal

机构信息

Department of Repertory, Kharagpur Homoeopathic Medical College and Hospital, Kharagpur, West Midnapore, West Bengal 721301 India.

Department of Chemistry, Faculty of Science, ObafemiAwolowo University, Il-Ife, Nigeria.

出版信息

In Silico Pharmacol. 2025 Jan 30;13(1):20. doi: 10.1007/s40203-025-00310-y. eCollection 2025.

Abstract

Globally, traditional and complementary therapies (such as homeopathy, phytotherapy and herbal medications) are becoming increasingly prevalent alongside modern medical care. The therapeutic substances used in homeopathy and other traditional complementary medicine disciplines are derived from these traditional applications. Numerous notable clinical and preclinical studies have shown their impact during COVID-19. This study aims to investigate the potential antiviral effects of medicinal alkaloids against the monkeypox virus in the current scenario. The structures of 47 known phytochemicals of commonly used medicines in CAM were obtained from PubChem in SDF format, minimized, and then docked against the 3D crystal structure of monkeypox virus methyltransferase VP39 (PDB: 8B07). The results were analyzed, and compounds with significant docking scores were further evaluated. The docking results showed that six compounds-Sarsaponin, Luteolin, Quercetin, Apigenin, and Ducimarine-had better docking scores than Tecovirimat, a standard drug used in managing monkeypox. Additionally, most compounds exhibited better docking scores than Cidofovir, another drug used against monkeypox. Interaction analysis revealed that hydrogen bonding, pi-pi T-shaped, and pi-alkyl interactions were responsible for the observed docking scores. Key amino acid residues involved in the interaction between the compounds and monkeypox virus methyltransferase VP39 included GLY 96, LEU 159, PHE 115, VAL 139, VAL 116, GLY 68, ARG 140, ILE 94, ASN 156, and ARG 156. Five phytochemicals-Luteolin, Quercetin, Apigenin, Sarsaponin, and Ducimarine-show strong potential as monkeypox virus methyltransferase inhibitors. Apigenin and Ducimarine are particularly promising due to their favorable profiles, including no PAINS alerts and good drug-like properties. Sarsaponin, while highly permeable, has high lipophilicity, which may limit its use. Luteolin and Quercetin also show potential but require further investigation due to PAINS alerts.

摘要

在全球范围内,传统和补充疗法(如顺势疗法、植物疗法和草药)在现代医疗护理的同时正变得越来越普遍。顺势疗法和其他传统补充医学学科中使用的治疗物质都源自这些传统应用。众多显著的临床和临床前研究已经表明了它们在新冠疫情期间的作用。本研究旨在调查在当前情况下药用生物碱对猴痘病毒的潜在抗病毒作用。从PubChem以SDF格式获取了47种已知的常用补充替代医学(CAM)药物的植物化学成分结构,进行了最小化处理,然后与猴痘病毒甲基转移酶VP39的3D晶体结构(PDB:8B07)进行对接。对结果进行了分析,并对具有显著对接分数的化合物进行了进一步评估。对接结果表明,六种化合物——刺芒柄花素、木犀草素、槲皮素、芹菜素和杜西马林——的对接分数优于用于治疗猴痘的标准药物特考韦瑞。此外,大多数化合物的对接分数优于另一种用于对抗猴痘的药物西多福韦。相互作用分析表明,氢键、π-π T形和π-烷基相互作用是观察到的对接分数的原因。化合物与猴痘病毒甲基转移酶VP39相互作用中涉及的关键氨基酸残基包括GLY 96、LEU 159、PHE 115、VAL 139、VAL 116、GLY 68、ARG 140、ILE 94、ASN 156和ARG 156。五种植物化学成分——木犀草素、槲皮素、芹菜素、刺芒柄花素和杜西马林——显示出作为猴痘病毒甲基转移酶抑制剂的强大潜力。芹菜素和杜西马林特别有前景,因为它们具有良好的特性,包括没有PAINS警报和良好的类药性质。刺芒柄花素虽然具有高渗透性,但具有高亲脂性,这可能会限制其使用。木犀草素和槲皮素也显示出潜力,但由于PAINS警报需要进一步研究。

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