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利用细胞内核磁共振技术在不同细胞周期阶段以及三维人体组织模型中阐明蛋白质结构和相互作用。

Protein structure and interactions elucidated with in-cell NMR for different cell cycle phases and in 3D human tissue models.

作者信息

Rynes Jan, Istvankova Eva, Dzurov Krafcikova Michaela, Luchinat Enrico, Barbieri Letizia, Banci Lucia, Kamarytova Kristyna, Loja Tomas, Fafilek Bohumil, Rico-Llanos Gustavo, Krejci Pavel, Macurek Libor, Foldynova-Trantirkova Silvie, Trantirek Lukas

机构信息

Central European Institute of Technology, Masaryk University, Brno, Czech Republic.

Interuniversity Consortium for Magnetic Resonance of Metallo Proteins, Sesto Fiorentino, Italy.

出版信息

Commun Biol. 2025 Feb 7;8(1):194. doi: 10.1038/s42003-025-07607-w.

Abstract

Most of our knowledge of protein structure and function originates from experiments performed with purified proteins resuspended in dilute, buffered solutions. However, most proteins function in crowded intracellular environments with complex compositions. Significant efforts have been made to develop tools to study proteins in their native cellular settings. Among these tools, in-cell NMR spectroscopy has been the sole technique for characterizing proteins in the intracellular space of living cells at atomic resolution and physiological temperature. Nevertheless, due to technological constraints, in-cell NMR studies have been limited to asynchronous single-cell suspensions, precluding obtaining information on protein behavior in different cellular states. In this study, we present a methodology that allows for obtaining an atomically resolved NMR readout of protein structure and interactions in living human cells synchronized in specific cell cycle phases and within 3D models of human tissue. The described approach opens avenues for investigating how protein structure or drug recognition responds to cell-cell communication or changes in intracellular space composition during transitions among cell cycle phases.

摘要

我们对蛋白质结构和功能的大部分认识都源于对溶解在稀释缓冲溶液中的纯化蛋白质进行的实验。然而,大多数蛋白质在成分复杂且拥挤的细胞内环境中发挥作用。人们已经做出了巨大努力来开发工具,以便在蛋白质的天然细胞环境中对其进行研究。在这些工具中,细胞内核磁共振光谱法是唯一一种能够在生理温度下以原子分辨率表征活细胞内空间中蛋白质的技术。然而,由于技术限制,细胞内核磁共振研究仅限于异步单细胞悬浮液,无法获取不同细胞状态下蛋白质行为的信息。在本研究中,我们提出了一种方法,该方法能够在特定细胞周期阶段同步的活人类细胞以及人类组织的三维模型中,获得蛋白质结构和相互作用的原子分辨率核磁共振读数。所描述的方法为研究蛋白质结构或药物识别如何响应细胞间通讯或细胞周期阶段转换过程中细胞内空间组成的变化开辟了道路。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/504e/11806009/a840f76c8b64/42003_2025_7607_Fig1_HTML.jpg

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