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对耐碱海螺旋菌新种的基因组见解,一种从印度撞击坑分离出的新型聚羟基丁酸酯产生菌,以及对海螺旋菌科的修订描述

Genomic insights into Marinospirillum alkalitolerans sp. nov., a novel PHB producing bacterium from an Indian impact crater, and an emended description of family Oceanospirillaceae.

作者信息

Joshi Amaraja, Thite Sonia, Godbole Devika, Boruah Dibyajyoti, Sindhu Dev Kant, Prabhu Atharva, Joseph Neetha, Yadav Amit, Sharma Avinash, Lodha Tushar

机构信息

National Centre for Microbial Resource (NCMR), National Centre for Cell Science, NCCS Complex, Savitribai Phule Pune University Campus, Ganeshkhind Road, Pune, Maharashtra, 411007, India.

Department of Pathology, Armed Forces Medical College, Pune, 411040, India.

出版信息

Antonie Van Leeuwenhoek. 2025 Feb 10;118(3):53. doi: 10.1007/s10482-024-02059-4.

Abstract

Two Gram-stain-negative bacterial strains (MEB164 and MEB148), were isolated from haloalkaline waters of Lonar, crater lake, India. The strains were helical, non-spore-forming and motile with polar tufts of flagella. Optimal growth occurred at 37 ℃, at pH 10 and with 3% (w/v) NaCl. 16S rRNA gene sequences of strains (MEB164 and MEB148) demonstrated the highest similarity with Marinospirillum alkaliphilum DSM 21637 (97.8%) followed by Marinospirillum celere DSM 18438 (96%). The genome size of strain MEB164 was determined to be 2.8 Mb with genomic DNA G + C contents of 53.1 mol %. ANI and dDDH values between strain MEB164 and the most closely related type strain M. alkaliphilum DSM 21637 were (72.3% and 21.4 ± 2.3%) while (AAI and POCP) values were (66.8 and 70.8%), respectively. Strain MEB164 exhibited potential for polyhydroxybutyrate (PHB) production, supported by key genes involved in PHB metabolism. Genome analysis further revealed presence of various pH tolerance genes, highlighting its adaptation to Lonar Lake. The predominant cellular fatty acids were summed feature 8 (C ω7c/C ω6c), C and summed feature 3 (C ω7c/C ω6c). The major respiratory quinone was ubiquinone-8. The prevalent polar lipids were diaminophosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two unidentified amino phospholipids, three unidentified phospholipids and one unidentified lipid. Polyphasic analysis suggests that the two strains constitute a novel species within the genus Marinospirillum (family Oceanospirillaceae), proposed as Marinospirillum alkalitolerans sp. nov. The type strain is MEB164 (= JCM 35957 = MCC 5207 = NCIMB 15458) and MEB148 (= JCM 35956 = MCC 5212 = NCIMB 15459) is an additional strain.

摘要

从印度洛纳火山口湖的盐碱水中分离出两株革兰氏阴性细菌菌株(MEB164和MEB148)。这些菌株呈螺旋状,不形成芽孢,通过极生鞭毛束运动。最适生长温度为37℃,pH值为10,NaCl浓度为3%(w/v)。菌株(MEB164和MEB148)的16S rRNA基因序列与嗜碱海螺旋菌DSM 21637(97.8%)相似度最高,其次是敏捷海螺旋菌DSM 18438(96%)。菌株MEB164的基因组大小测定为2.8 Mb,基因组DNA的G + C含量为53.1 mol%。菌株MEB164与最密切相关的模式菌株嗜碱海螺旋菌DSM 21637之间的ANI和dDDH值分别为(72.3%和21.4±2.3%),而(AAI和POCP)值分别为(66.8和70.8%)。菌株MEB164表现出产生聚羟基丁酸酯(PHB)的潜力,这得到了参与PHB代谢的关键基因的支持。基因组分析进一步揭示了各种耐pH基因的存在,突出了其对洛纳湖的适应性。主要的细胞脂肪酸为总特征8(C ω7c/C ω6c)、C和总特征3(C ω7c/C ω6c)。主要呼吸醌为泛醌-8。主要的极性脂类为二氨基磷脂酰甘油、磷脂酰甘油、磷脂酰乙醇胺、两种未鉴定的氨基磷脂、三种未鉴定的磷脂和一种未鉴定的脂类。多相分析表明,这两个菌株构成了海螺旋菌属(海螺旋菌科)内的一个新物种,提议命名为耐碱海螺旋菌。模式菌株为MEB164(=JCM 35957 = MCC 5207 = NCIMB 15458),MEB148(=JCM 35956 = MCC 5212 = NCIMB 15459)是另一菌株。

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