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IAMPDB:一个经人工整理的昆虫源抗菌肽知识库。

IAMPDB: A Knowledgebase of Manually Curated Insects-Derived Antimicrobial Peptides.

作者信息

Mondal Rajat Kumar, Tripathi Prabhat, Mondal Rudra Prasad, Sen Debarup, Arya Ankish, Karmakar Debayan, Pal Oshin, Dey Avijit, Samanta Sintu Kumar

机构信息

Department of Applied Sciences, Indian Institute of Information Technology, Allahabad (IIIT-A), Prayagraj, Uttar Pradesh, India.

GeneArche Wellness Pvt. Ltd., Pune, Maharashtra, India.

出版信息

J Pept Sci. 2025 Mar;31(3):e70006. doi: 10.1002/psc.70006.

Abstract

Insects, a majority of animal species, rely on innate immunity and antimicrobial peptides (AMPs), which are a part of their innate immunity, to combat diverse parasites and pathogens. These peptides have applications ranging from agriculture to antimicrobial resistance (AMR). However, there is a lack of a specialized database, prompting the development of the Insect Antimicrobial Peptide Database (IAMPDB) as a pioneering comprehensive Knowledgebase dedicated to insect-derived antimicrobial peptides (IAMPs), serving as a resource for researchers and industry professionals. Curated from UniProt and associated literature(s), IAMPDB currently houses 438 curated entries of IAMPs from various insect species, spanning 10 taxonomical orders of insects. Each entry is meticulously annotated with details on peptide sequence, source organism, activities, physicochemical properties, and more. IAMPDB offers a user-friendly interface with diverse search options, interactive visualizations, and links to external databases; advanced tools, including a peptide sequence alignment toolbox and a peptide feature calculation toolbox, facilitating sequence alignment, physicochemical property calculation, and in-depth analysis. The knowledgebase is accessible online (at URL https://bblserver.org.in/iampdb/).

摘要

昆虫作为动物物种的大多数,依靠先天免疫和抗菌肽(AMPs)(它们是先天免疫的一部分)来对抗各种寄生虫和病原体。这些肽的应用范围从农业到抗微生物耐药性(AMR)。然而,缺乏一个专门的数据库,这促使昆虫抗菌肽数据库(IAMPDB)的开发,它是一个开创性的综合性知识库,专门致力于昆虫源抗菌肽(IAMPs),为研究人员和行业专业人士提供资源。IAMPDB从UniProt和相关文献中精心挑选,目前收录了来自各种昆虫物种的438条经过整理的IAMP条目,涵盖10个昆虫分类目。每个条目都详细注释了肽序列、来源生物、活性、理化性质等信息。IAMPDB提供了一个用户友好的界面,具有多种搜索选项、交互式可视化以及与外部数据库的链接;还提供了高级工具,包括肽序列比对工具箱和肽特征计算工具箱,便于进行序列比对、理化性质计算和深入分析。该知识库可在线访问(网址为https://bblserver.org.in/iampdb/)。

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