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基于线粒体基因组分析的三种物种的系统发育关系

Phylogenetic Relationships of Three Species Based on Mitochondrial Genome Analysis.

作者信息

Wang Xianyi, Guo Zhongyao, Tao Jiawei, Zhang Gongyou, Wang Guoyu, Wang Yaping, Long Yaohang, Liu Hongmei

机构信息

Engineering Research Center of Health Medicine Biotechnology of Institution of Higher Education of Guizhou Province Guiyang China.

Engineering Research Center of Medical Biotechnology, School of Biology and Engineering Guizhou Medical University Guiyang China.

出版信息

Ecol Evol. 2025 Feb 12;15(2):e70901. doi: 10.1002/ece3.70901. eCollection 2025 Feb.

Abstract

has been a remarkable genus throughout the history of macrofungi. However, there is a lack of information on this genus of macrofungi. This study determined the order of nucleotides in the mitochondrial genomes (mitogenomes) of three species, followed by a detailed investigation of the obtained genetic information. Circular mitogenomes of , . , and had sizes of 78,960, 61,851, and 81,282 bp, respectively. The genomes exhibited variations in genetic content, gene length, tRNA, and codon usage. mitogenomes demonstrated variable evolutionary rates across several protein-coding genes. The results revealed significant gene rearrangements in mitogenomes, including gene displacement and tRNA duplication. Utilizing Bayesian inference and maximum likelihood methods on a comprehensive set of conserved mitochondrial proteins, we generated a well-supported phylogenetic tree for Basidiomycota. This analysis revealed that . and are closely related, while confirming the paraphyletic nature of the genus and its genetic affinity with other species of the subclass Phallomycetidae. This study presents a basic structure for understanding the evolutionary dynamics, genetic makeup, and taxonomy categorization of this significant fungal community.

摘要

在大型真菌的整个历史中,它一直是一个非凡的属。然而,关于这个大型真菌属的信息却很缺乏。本研究确定了三个物种线粒体基因组(有丝分裂基因组)中的核苷酸顺序,随后对获得的遗传信息进行了详细研究。[物种名称1]、[物种名称2]和[物种名称3]的环状有丝分裂基因组大小分别为78,960、61,851和81,282 bp。这些基因组在遗传内容、基因长度、tRNA和密码子使用方面表现出差异。[物种名称1]、[物种名称2]和[物种名称3]的有丝分裂基因组在几个蛋白质编码基因上表现出不同的进化速率。结果揭示了[物种名称1]、[物种名称2]和[物种名称3]有丝分裂基因组中存在显著的基因重排,包括基因移位和tRNA重复。利用贝叶斯推断和最大似然方法对一组全面的保守线粒体蛋白进行分析,我们构建了一个支持度良好的担子菌系统发育树。该分析表明,[物种名称1]和[物种名称2]密切相关,同时证实了[属名]属的并系性质及其与鬼笔菌亚纲其他物种的遗传亲缘关系。本研究为理解这个重要真菌群落的进化动态、遗传组成和分类学分类提供了一个基本结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/efed/11815223/635bad261d80/ECE3-15-e70901-g004.jpg

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