Xin Rui, Jiang Limin, Yu Hui, Yan Fengyao, Tang Jijun, Guo Yan
Department of Computer Science, University of South Carolina, Columbia, South Carolina, USA.
Department of Public Health and Sciences, Sylvester Comprehensive Cancer Center, University of Miami, Miami, Florida, USA.
Quant Biol. 2024 Sep;12(3):245-254. doi: 10.1002/qub2.49. Epub 2024 Jun 5.
Mutational signatures refer to distinct patterns of DNA mutations that occur in a specific context or under certain conditions. It is a powerful tool to describe cancer etiology. We conducted a study to show cancer heterogeneity and cancer specificity from the aspect of mutational signatures through collinearity analysis and machine learning techniques. Through thorough training and independent validation, our results show that while the majority of the mutational signatures are distinct, similarities between certain mutational signature pairs can be observed through both mutation patterns and mutational signature abundance. The observation can potentially assist to determine the etiology of yet elusive mutational signatures. Further analysis using machine learning approaches demonstrated moderate mutational signature cancer specificity. Skin cancer among all cancer types demonstrated the strongest mutational signature specificity.
突变特征是指在特定背景或某些条件下发生的独特DNA突变模式。它是描述癌症病因的有力工具。我们开展了一项研究,通过共线性分析和机器学习技术从突变特征方面展示癌症异质性和癌症特异性。经过全面训练和独立验证,我们的结果表明,虽然大多数突变特征是不同的,但通过突变模式和突变特征丰度都可以观察到某些突变特征对之间的相似性。这一观察结果可能有助于确定难以捉摸的突变特征的病因。使用机器学习方法的进一步分析表明了适度的突变特征癌症特异性。所有癌症类型中,皮肤癌表现出最强的突变特征特异性。