Ahmed Shazia, Saeed Mohammad Umar, Choudhury Arunabh, Mohammad Taj, Hussain Afzal, AlAjmi Mohamed F, Yadav Dharmendra Kumar, Hassan Md Imtaiyaz
Department of Computer Science, Jamia Millia Islamia, New Delhi, India.
Centre for Interdisciplinary Research in Basic Sciences, Jamia Millia Islamia, New Delhi, India.
OMICS. 2025 Mar;29(3):105-115. doi: 10.1089/omi.2024.0207. Epub 2025 Feb 19.
Interleukin-2-inducible T-cell kinase (ITK) is a critical tyrosine kinase enzyme that is involved in the activation and differentiation of T cells. ITK is mainly found in T cells, which plays an essential role in controlling T-cell receptor signaling and downstream pathways. ITK regulates the synthesis of cytokines, particularly interleukin-2 (IL-2), and the development of Th2 cells. ITK is of interest for drug discovery and molecular targeting in immunology, autoimmune diseases, and cancer. Here, we report a structure-based virtual screening utilizing a collection of small molecules obtained from the PubChem database with an eye on the discovery of drugs targeting ITK. The compounds were selected according to compliance with the Lipinski's rule of five. The molecular docking investigation focused on prioritizing binding affinity and specific interaction toward the kinase domain. The highest-ranking search results were subjected to identification of possible pan-assay interference compounds (PAINS), assessment of pharmacokinetic properties, and estimation of pharmacological activity using Prediction of Activity Spectra of Substances (PASS) analysis. The interactions among these chemicals and the salient residues in the interleukin-2-inducible T-cell kinase (ITK) kinase domain were unpacked using a two-dimensional approach. The reference inhibitor ITK-Inhibitor-2 (IMM) and four elucidated compounds with PubChem CIDs, namely, 90442621 (PFB), 141764004 (FTP), 149213796 (FPP), and 145983307 (MBD), showed significant binding affinity of -8, -10.4, -9.8, -10.2, and -10.7 kcal/mol, respectively, and high selectivity for the ITK binding pocket. In conclusion, this study reports on the potential of several compounds for therapeutic targeting of ITK. Furthermore, structural analysis revealed the interaction of proposed compounds and active site residues within the ATP-binding pocket is highly similar to known inhibitors but shares distinct interaction patterns that could improve specificity. This specificity and optimization hold potential for the development of next-generation ITK inhibitors with possible applications in the treatment of immune-related disorders and cancers. Further , , and translational clinical research are called for.
白细胞介素-2诱导型T细胞激酶(ITK)是一种关键的酪氨酸激酶,参与T细胞的激活和分化。ITK主要存在于T细胞中,在控制T细胞受体信号传导和下游通路中起重要作用。ITK调节细胞因子的合成,特别是白细胞介素-2(IL-2),以及Th2细胞的发育。ITK在免疫、自身免疫性疾病和癌症的药物发现和分子靶向方面具有研究价值。在此,我们报告了一项基于结构的虚拟筛选,利用从PubChem数据库获得的小分子集合,着眼于发现靶向ITK的药物。根据符合Lipinski五规则选择化合物。分子对接研究着重于对激酶结构域的结合亲和力和特异性相互作用进行排序。对排名最高的搜索结果进行可能的泛测定干扰化合物(PAINS)鉴定、药代动力学性质评估,并使用物质活性谱预测(PASS)分析估计药理活性。使用二维方法解析了这些化学物质与白细胞介素-2诱导型T细胞激酶(ITK)激酶结构域中显著残基之间的相互作用。参考抑制剂ITK-抑制剂-2(IMM)和四种具有PubChem CID的阐明化合物,即90442621(PFB)、141764004(FTP)、149213796(FPP)和145983307(MBD),分别显示出-8、-10.4、-9.8、-10.2和-10.7 kcal/mol的显著结合亲和力,以及对ITK结合口袋的高选择性。总之,本研究报告了几种化合物对ITK进行治疗性靶向的潜力。此外,结构分析表明,所提出的化合物与ATP结合口袋内活性位点残基的相互作用与已知抑制剂高度相似,但具有独特的相互作用模式,可提高特异性。这种特异性和优化为开发下一代ITK抑制剂奠定了潜力,可能应用于免疫相关疾病和癌症的治疗。进一步的基础研究、临床前研究和转化临床研究是必要的。